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Philip W Fowler's Projects

2015-01-13-oxford icon 2015-01-13-oxford

Software Carpentry Bootcamp at the Wellcome Trust Centre for Human Genetics in Oxford

fd169-image-processing-example icon fd169-image-processing-example

Short python script showing how image processing techniques have been applied to simulations of phase-separating lipids. See the Faraday Discussion paper, http://dx.doi.org/10.1039/c3fd00131h

gemucator icon gemucator

Genbank Mutation Locator: give it a mutation and it will tell you the location in the reference genome (and vice versa)

gromarks icon gromarks

Simple python package for creating scripts to benchmark GROMACS

jitter icon jitter

Simple python for adding jitter to a list of values to help plotting beeswarm/jitter plots

kish icon kish

k-mer fishing in a GenBank reference

mdanalysis icon mdanalysis

MDAnalysis is a Python library to analyze molecular dynamics trajectories.

pygsi icon pygsi

a Python class to interrogate BIGISI

snpit icon snpit

Whole-genome SNP based identification of members of the Mycobacterium tuberculosis complex

vasta icon vasta

Simply Python class for creating FASTA files from incremental VCF files

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