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groupederrors.jl's Issues

fail to proceed with ShiftedArray containing missing values

Very briefly I think there is a problem in handling ShiftedArrays with mixed type Union{Float64, Missings.Missing}

MethodError: no method matching isnan(::ShiftedArrays.ShiftedArray{Union{Float64, Missings.Missing},1,Array{Union{Float64, Missings.Missing},1}})

CategoricalString support

Hi, I'm trying to plot data sorted by a categorical array.

Using this:

@> integration begin
      @across :all
      @x _.agegroup :discrete
      @y _.haptic (mean, std)
      @plot plot()
  end

I get the error ERROR: No user recipe defined for CategoricalString{UInt32}.
If I use string.(_agegroup), the dataframe is sorted alfabetically.

Should categoricalarray/categoricalstring support be added, or the workaround is easy? Thanks, Nicolò

Add analysis with several variables

So far only locreg accepts two variables, it'd be interesting to set up a mechanism to accept an arbitrary number of columns in the analysis.

Bootstrap estimate

Make sure it defaults to std and add test that it matches @across :all in discrete locreg

Error when displaying results outside REPL

I am trying to plot some results using a simple terminal execution (e.g. julia Main.jl) instead of the REPL. I have the following plotting code:

plotResult = @> dataDf begin
	@splitby _.markedItems
	@x _.XAxis
	@across _.iteration
	@y _.results (mean, sem)
	@plot plot(show=true)
end

This works fine inside the REPL and opens a browser with the plot. However, when run directly I get the following error:

ERROR: LoadError: MethodError: no method matching json(::Array{Any,1})
The applicable method may be too new: running in world age 24366, while current world is 24367.
Closest candidates are:
  json(::Any) at /Users/eddie/.julia/v0.6/JSON/src/Writer.jl:340 (method too new to be called from this world context.)
  json(::Any, !Matched::Any) at /Users/eddie/.julia/v0.6/JSON/src/Writer.jl:341 (method too new to be called from this world context.)
Stacktrace:
 [1] plotly_series_json(::Plots.Plot{Plots.PlotlyBackend}) at /Users/eddie/.julia/v0.6/Plots/src/backends/plotly.jl:705
 [2] html_body(::Plots.Plot{Plots.PlotlyBackend}, ::Void) at /Users/eddie/.julia/v0.6/Plots/src/backends/plotly.jl:725
 [3] #standalone_html#263(::String, ::Function, ::Plots.Plot{Plots.PlotlyBackend}) at /Users/eddie/.julia/v0.6/Plots/src/backends/web.jl:8
 [4] (::Plots.#kw##standalone_html)(::Array{Any,1}, ::Plots.#standalone_html, ::Plots.Plot{Plots.PlotlyBackend}) at ./<missing>:0
 [5] write_temp_html(::Plots.Plot{Plots.PlotlyBackend}) at /Users/eddie/.julia/v0.6/Plots/src/backends/web.jl:36
 [6] standalone_html_window at /Users/eddie/.julia/v0.6/Plots/src/backends/web.jl:45 [inlined]
 [7] _display at /Users/eddie/.julia/v0.6/Plots/src/backends/plotly.jl:756 [inlined]
 [8] display(::Plots.PlotsDisplay, ::Plots.Plot{Plots.PlotlyBackend}) at /Users/eddie/.julia/v0.6/Plots/src/output.jl:145
 [9] _do_plot_show(::Plots.Plot{Plots.PlotlyBackend}, ::Bool) at /Users/eddie/.julia/v0.6/Plots/src/output.jl:152
 [10] _plot!(::Plots.Plot{Plots.PlotlyBackend}, ::Dict{Symbol,Any}, ::Tuple{Array{Float64,1},Array{Float32,1}}) at /Users/eddie/.julia/v0.6/Plots/src/plot.jl:242
 [11] #plot#145(::Array{Any,1}, ::Function, ::Array{Float64,1}, ::Vararg{Any,N} where N) at /Users/eddie/.julia/v0.6/Plots/src/plot.jl:56
 [12] (::RecipesBase.#kw##plot)(::Array{Any,1}, ::RecipesBase.#plot, ::Array{Float64,1}, ::Array{Float32,1}, ::Vararg{Array{Float32,1},N} where N) at ./<missing>:0
 [13] #plot_helper#42(::Array{Any,1}, ::Function, ::GroupedErrors.ProcessedTable{IndexedTables.IndexedTable{Tuple{Float64,Tuple{Float32,Float32}},Tuple{Int64,Int64},IndexedTables.Columns{Tuple{Int64,Int64},Tuple{Array{Int64,1},Array{Int64,1}}},IndexedTables.Columns{Tuple{Float64,Tuple{Float32,Float32}},Tuple{Array{Float64,1},Array{Tuple{Float32,Float32},1}}}}}, ::Function, ::Symbol) at /Users/eddie/.julia/v0.6/GroupedErrors/src/plot_macro.jl:32
 [14] (::GroupedErrors.#kw##plot_helper)(::Array{Any,1}, ::GroupedErrors.#plot_helper, ::GroupedErrors.ProcessedTable{IndexedTables.IndexedTable{Tuple{Float64,Tuple{Float32,Float32}},Tuple{Int64,Int64},IndexedTables.Columns{Tuple{Int64,Int64},Tuple{Array{Int64,1},Array{Int64,1}}},IndexedTables.Columns{Tuple{Float64,Tuple{Float32,Float32}},Tuple{Array{Float64,1},Array{Tuple{Float32,Float32},1}}}}}, ::Function, ::Symbol) at ./<missing>:0
 [15] #plot_helper#53(::Array{Any,1}, ::Function, ::GroupedErrors.Selector{DataFrames.DataFrame,Plotting.##2#7,GroupedErrors.##2#7,Plotting.##4#9,Plotting.##3#8,Plotting.##5#10}, ::Function, ::Symbol) at /Users/eddie/.julia/v0.6/GroupedErrors/src/plot_macro.jl:42
 [16] (::GroupedErrors.#kw##plot_helper)(::Array{Any,1}, ::GroupedErrors.#plot_helper, ::GroupedErrors.Selector{DataFrames.DataFrame,Plotting.##2#7,GroupedErrors.##2#7,Plotting.##4#9,Plotting.##3#8,Plotting.##5#10}, ::Function, ::Symbol) at ./<missing>:0
 [17] plotData(::IndexedTables.IndexedTable{NamedTuples._NT_results{Float32},Tuple{Int64,Int64,Int64},IndexedTables.Columns{NamedTuples._NT_markedItems_repeat_iteration{Int64,Int64,Int64},NamedTuples._NT_markedItems_repeat_iteration{Array{Int64,1},Array{Int64,1},Array{Int64,1}}},IndexedTables.Columns{NamedTuples._NT_results{Float32},NamedTuples._NT_results{Array{Float32,1}}}}, ::Int64) at /Users/eddie/dev/single-qubit/Plotting.jl:17
 [18] main() at /Users/eddie/dev/single-qubit/Main.jl:51
 [19] include_from_node1(::String) at ./loading.jl:576
 [20] include(::String) at ./sysimg.jl:14
 [21] process_options(::Base.JLOptions) at ./client.jl:305
 [22] _start() at ./client.jl:371
while loading /Users/eddie/dev/single-qubit/Main.jl, in expression starting on line 58

The behavior in the REPL is different from the command line. Any ideas on how to get the html output, or at least some output (preferably pdf/eps)? For example, Plots.savefig(plotResult, "plot.pdf") also gives a warning:

WARNING: _show is not defined for this backend. m=application/pdf

and results in an empty plot.pdf file.

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