Srun error in cdo_remap.sh arise from remap.py of bedmap2 about pism-ais

[talbrecht]

The remap.py skript generates a bash script (cdo_remap.sh), which can be submitted to a slurm batch queue (see comment in the header):

# This script is specific for the PIK cluster, which uses SLURM for job scheduling. 
# and the module system.

If you want to run the remapping locally with cdo, you only need the part:

cdo genycon,/p/projects/tumble/albrecht/pism_input/data/cdo_remapgrids/pism_16km.nc /p/projects/tumble/albrecht/pism_input/data/bedmap2/bedmap2_1km_input.nc /p/projects/tumble/albrecht/pism_input/data/bedmap2/mapweights_16km.nc

etc.

You can also adjust the slurm skript to any other batch queue system, if you run into memory issues..

[rersnow]

Okay, I probably know how to do it. Thanks for your suggestions and help！

[m-kreuzer]

On the PIK cluster, we make use of the Environment Modules. The commands

module load cdo
module load nco

load cdo and nco into the current environment (include in PATH). If your machine does not use the module system, you need to comment this out and make sure that the necessary software is installed and available in your PATH variable.

Hope this helps. Please let us know if the issue can be closed.

[rersnow]

Thank you very much for your help, it is very useful for me.
My machine does not use the module system . So I have commented some statements in the script and only recalculate locally with CDO.
I will close this issure. Thank you again for your help!