planteome / co_321-wheat-traits Goto Github PK

The folowing unit has a likely encoding problem:

;"CO_321:0001590";"?mol/m2/s"

It is present in the initial import, therefore no easy way to correct

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Example:
current Wheat_td.csv Trait description is missing ü in Müller toward the end:

Septoria nodorum blotch incidence in the plants caused by the agent Stagonospora nodorum (syn. Septoria glume blotch) (Phaeosphaeria nodorum (E. M ller) Hedjaroude (syn. Stagonospora nodorum).

Should be:

Septoria nodorum blotch incidence in the plants caused by the agent Stagonospora nodorum (syn. Septoria glume blotch) (Phaeosphaeria nodorum (E. Müller) Hedjaroude (syn. Stagonospora nodorum).

I have created a dedicated branch. We are working on it and will let you know as soon as it seems complete by assigning it to @marieALaporte if that's fine with you. Let us know if you want to discuss this.

There has been version mixing. JIC variables have been added to the www.cropontology.org website without reusing the latest version which was available only in github.
Action:

• JIC version downloaded from Crop ontology web site and saved in the github as CO_321.csv for archive
• Add JIC variables at the end of the master version
• pull request

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"phosphorus" is the correct internationally recognized spelling of the chemical element P. Phosphorous is an adjective.

https://doi.org/10.1038/426119c

Hi @marieALaporte,
Could you please provide me the latest version of the wheat TD in Excel format? I downloaded the wheat_TD.csv from here (github) which is available under the "Code" tab but when I tried to open it, the file was screwed up. We can use "semi-colon" as a delimiter in Excel, and it looks better but since "comma" has been used in many columns to separate authors, or in descriptions or in Reference columns, the changing into .csv file causing this issue I guess. So, when we use this option, is does not work properly and cannot see information correctly in designated columns/headers. I could not find an easy way to formatting it. The TD that we can download from the CO website has also same problem. It would be easier for the curators if they can just download Excel.
Many thanks

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The definition of grain yield is missing the idea of unit area. A yield is a mass per unit area. It is different from the weight that is just a mass.
Could you update it?
http://www.cropontology.org/rdf/CO_321:0000013

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I ran across this odd wheat term: CO_321:1000003 on our dev browser:
http://dev.planteome.org/amigo/term/CO_321:1000003#display-lineage-tab

No name or definition and only exists in file as the parent term of 29 of the C0_321 traits, along with the respective TO term they are mapped to.

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It causes issue with file annotation.
Affects:

Propositions:
1- keep only CO_321:0501073
2- rename CO_321:0501073 from GLys_M_pct to GLys_Mp_pct

what do you think @ShresthaR ? Do you have Jean Luc or Clay github ID to double check with them ?

Same for :

and

and

CO_321:0000831: wheat threshblty estimation method
Definition: Observe threshability by hand threshing of one or two spikes and rate it according how easily grains are separated from the rachis and glumes using 1 (hard to thresh) to 9 (easy to thresh) scale. Source: CO:curators

Propose rename: "wheat threshability estimation method" and add synonym: "threshblty estimation"

Those two variables are axactly the same. Can we remove CO_321:0501002 or is it used in T3 ?
If we can remove it, let us know we will take care of it.

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