pni-lab / connattractor

Connectome-based Hopfiled Neural Networks (fcHNN)

connattractor

Laboratory for Predictive Neuroimaging - University Hospital Essen, Germany

Webpage with manuscript and getting started guide

https://pni-lab.github.io/connattractor

How to install the connattractor package?

The package 'connattractor' is available on PyPI!

pip install connattractor

How to re-run the analyses?

• Install the PyPI package

  • run the notebooks in connattractor/notebooks

• Run the analyses with 1 click (in the cloud)

  • 
  • Open in GitHub Codespaces (click code on top right on the github page of the repo)

• Set up everything locally with docker

  • install docker
  • clone the repo and start your notebook in a docker container

    git clone https://github.com/pni-lab/connattractor.git
    cd connattractor
    docker run -it -v $PWD:/mounted/connattractor -p 8080:8080 -p 8888:8888 pnilab/connattractor:latest jupyter notebook

  • copy paste the last link in your browser to start the notebook

• Bare-metal (developers)

  • clone this repository with git as above
  • set up a python environment (e.g with conda)
  • install all requirements from requirements.txt
  • start developing

How to render the web-page locally?

cd docs
myst start