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Networks. Boil 'em mash 'em stick 'em in a stew. And now, plot 'em.

License: Other

Julia 100.00%
ecological-network ecology force-directed-graphs force-layout graph-algorithms

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ecologicalnetworksplots.jl's Issues

some example plots not rendering

Several of the plots listed on https://poisotlab.github.io/EcologicalNetworksPlots.jl/latest/examples/
don't actually plot (using Julia 1.4.2). No error messages for me, just the plot doesn't seem to work.

#For example:
#"Force directed layout"
Umod = web_of_life("M_PA_003")
I = initial(RandomInitialLayout, Umod)
for step in 1:2000
position!(ForceDirectedLayout(1.5), I, Umod)
end
plot(I, Umod, aspectratio=1)
scatter!(I, Umod, bipartite=true)

the other plots that don't work are:

Fweb = simplify(nz_stream_foodweb()[5])
I = initial(FoodwebInitialLayout, Fweb)
for step in 1:4000
position!(ForceDirectedLayout(true, false, 2.5), I, Fweb)
end
plot(I, Fweb)
scatter!(I, Fweb)

and:

Fweb = simplify(nz_stream_foodweb()[5])
I = initial(FoodwebInitialLayout, Fweb)
for step in 1:4000
position!(ForceDirectedLayout(true, false, 2.5), I, Fweb)
end
tl = trophic_level(Fweb)
for s in species(Fweb)
I[s].y = tl[s]
end
plot(I, Fweb)
scatter!(I, Fweb)

and

Umod = web_of_life("M_PA_003")
I = initial(RandomInitialLayout, Umod)
for step in 1:4000
position!(ForceDirectedLayout(2.5), I, Umod)
end
plot(I, Umod, aspectratio=1)
scatter!(I, Umod)
N = convert(AbstractUnipartiteNetwork, convert(BinaryNetwork, Umod))
core3 = collect(keys(filter(p -> p.second == 3, degree(N))))
plot!(I, N[core3], lc=:red)
scatter!(I, N[core3], mc=:red)

that's it. the other plot examples on that page work fine

Add a method for annotation!

In some cases, it would be useful to be able to label some nodes on the network, which can be done with annotate!(L, N) where L is a layout, and N is a network (or a subset of it).

This can probably be done with a recipe, but I'm not finding this info anywhere in the doc -- @mkborregaard do you have more info about where I should look?

TagBot trigger issue

This issue is used to trigger TagBot; feel free to unsubscribe.

If you haven't already, you should update your TagBot.yml to include issue comment triggers.
Please see this post on Discourse for instructions and more details.

Add heatmap

Add a heatmap function to plot the matrix itself

Add a way to build a nice legend

At the moment, the legends are not good. It would nice to have a colorbar, or a sample of point sizes with the values. I will do this one later, as it's not really critical.

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