poissonconsulting / tmbr Goto Github PK
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Home Page: https://poissonconsulting.github.io/tmbr/
License: Other
An R package to facilitate analyses using TMB
Home Page: https://poissonconsulting.github.io/tmbr/
License: Other
last builds on travis 10 months ago were passing, failing now that it has been converted to actions
use random dimensions to generate correct dims of 0 once receive data
but use data_set function to access
github action has been failing since implemented
to indicate type
anything that used my other packages in the family should be moved to mbr where they should be documented and exported
data <- data.frame(Throws = 8, Heads = 1)
ml <- "
#include <TMB.hpp>
template<class Type>
Type objective_function<Type>::operator() () {
DATA_VECTOR(Throws);
DATA_VECTOR(Heads);
PARAMETER(bHeads);
vector<Type> pHeads = Heads;
ADREPORT(pHeads)
Type nll = 0.0;
for(int i = 0; i < Heads.size(); i++){
pHeads(i) = invlogit(bHeads);
nll -= dbinom(Heads(i), Throws(i), pHeads(i), true);
}
return nll;
}"
ml %<>% model(gen_inits = function(data) list(bHeads = 0), derived = "pHeads")
ml %<>% analyse(data = data)
coef(ml, param_type = "derived")
get CIs based on profiling (ignored bayesian) for parameters....
Added github actions and changed readme file but was unable to knit due to package dependency issues. Need to knit and push readme to show changes to badge and conduct sections.
to get confidence intervals from new_code using lincomb and tmbprofile
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