qbatch / heatmap-rails Goto Github PK

QBATCH(1)               User   Contributed   Perl   Documentation

NAME
       qbatch - submits a command line to Grid Engine or PBS  via
qsub

SYNOPSIS
       qbatch [options] [--queue] -- command

       qbatch  is designed to be inserted before any command that
       you would usually run from the command line.  In case of 
       argument collision where both your command and qbatch 
       share an option such as --verbose be sure to use the '--'
       syntax to split qbatch  options  from  the commands
       options

          $ qbatch --verbose -- mincmath --verbose ...

DESCRIPTION
       qbatch  is  a quick hack if you don't want to write a qsub
       script

       The idea is to just bung qbatch in front  of  any  command
       you would normally enter on the command line. (as per 'nice')

        eg:
           $ qbatch ls -F
           $  qbatch  -q  wb325.q@taylor -N job23 -- mincmath \
                fred.mnc ..

       Problems or comments should be sent to: [email protected]

OPTIONS
       -v, --verbose
           Be noisy when doing things (most importantly this will
             echo the resulting script to the terminal)

       --verbose
           Print version number and exit

       -h, --help
           Dump some quick help output

       --man
           Dump a man page

       -f, --fake
           Don't  run anything, This is useful when combined with
             --verbose or --script

       -s, --script
           Dont run anything, just output the batch script to the
             specified filename

       --type
           Type  of  queing  system,  currently only pbs and gri-
              dengine are supported

       -q, --queue
           Specify a queue to run a job in.  Use  something  like
              all.q@hostname to specify a particular host. Defaults
              to all.q, the default SGE queue

       -N, --name
           Specify a job name to run the job as. By default this
              will be "STDIN"

       -d, --depends
           Specify a list of job dependencies by job name or num-
              ber which have to run before this job will

       -l, --logfile
           Logfile for output of the  command.  By  Default  this
              will make a file in the current directory called 
              qbatch-<PID>.log where PID is the Process ID of the
              instance of qbatch

       -j, --jid
           return only the job id of the submitted job on STDOUT

AUTHOR
       Andrew Janke - [email protected]