qiaoxingli / c3

Cancer Clustering Collaborative

C3 (aka c-cubed)

• Cancer Clustering Collaborative - Inferring NF2 Treatment Based on Similarity to characterized cancers
• Details of our analysis can before found in our poster and final presentation

SVAI Hackathon June 2017

Codes for the main analysis steps in our project are listed here.

• VCF Filtering: VCF_filtering.ipynb
• TCGA Data Loading/Processing: Broad FireHose Dat.ipynb
• Mutational Signature and mutated gene/GO term Extraction, preparing matrices for clustering: tcga_processing.R
• Dimensional reduction and Cluster Analysis: Cluster Analysis.ipynb
• Gene Mutation Localization: NF2 VCF Analysis.ipynb