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ctk's Introduction

C-map toolkit

samToSparseMatrix.py : Convert SAM to contact matrix

cMapReduceRes.py : Reduce C-map resolution

cMapBalance.py : Apply matrix balancing using KR method

cMapCorr.py : Calculate pearson and spearman correlation between two C-maps

cMapInsulation.py : Calculate insulation score from C-map

cMapCalcDistanceBg.py :Calculate distance-dependent contact frequency background

make2Dfrom1D.py : Make 2D contacts from 1D features

cMapAggregate.py : Aggregate contact analysis

findLoop.py : Call significant contact loops

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