Comments (11)
from jum.
Thanks for your reply.
I got the follow issue regarding space limit. I thought it might be related to java or perl and trying to locate the script line to make some changes. Do you have some suggestions:
Sample names are:
4654-S113_S17_L001
4654-S114_S18_L001
4654-S115_S19_L001
4654-S116_S20_L001
4654-S117_S21_L001
4654-S118_S22_L001
4654-S119_S23_L001
4654-S120_S24_L001
4654-S129_S33_L001
4654-S130_S34_L001
4654-S131_S35_L001
4654-S132_S36_L001
4654-S133_S37_L001
4654-S134_S38_L001
4654-S135_S39_L001
4654-S136_S40_L001
8 input samples to consider under the current condition
8 input samples to consider under the current condition
Preparing for intron retention AS events analyses...
Processing junction overhangs for Sample 4654-S131_S35_L001... Success.
Processing junction overhangs for Sample 4654-S135_S39_L001... Success.
Processing junction overhangs for Sample 4654-S129_S33_L001... Success.
Processing junction overhangs for Sample 4654-S133_S37_L001... Success.
Processing junction overhangs for Sample 4654-S132_S36_L001... Success.
Processing junction overhangs for Sample 4654-S130_S34_L001... Success.
Processing junction overhangs for Sample 4654-S119_S23_L001... Success.
Processing junction overhangs for Sample 4654-S117_S21_L001... Success.
Processing junction overhangs for Sample 4654-S113_S17_L001... Success.
Processing junction overhangs for Sample 4654-S116_S20_L001... Success.
Processing junction overhangs for Sample 4654-S136_S40_L001... Success.
Processing junction overhangs for Sample 4654-S114_S18_L001... Success.
Processing junction overhangs for Sample 4654-S134_S38_L001... Success.
Processing junction overhangs for Sample 4654-S115_S19_L001... Success.
Processing junction overhangs for Sample 4654-S120_S24_L001... Success.
Processing junction overhangs for Sample 4654-S118_S22_L001... Success.
sort: write failed: /tmp/sortyDi2zy: No space left on device
sort: write failed: /tmp/sortW6Z6Pdsort: write failed: /tmp/sort4J3w93: No space left on device
: No space left on device
4654-S113_S17_L001
4654-S114_S18_L001
4654-S115_S19_L001
cp: cannot stat '4654-S116_S20_L001_junction_counts_combined_intron_retention_event_list.txt': No such file or directory
I was running it on server and the program may be looking for my home directory's tmp and that usually have limited space. It would be helpful to point me how to set it to other directory (with large space).
from jum.
from jum.
Thank you very much! It solved the issue.
from jum.
Why didn't I see a JUM_diff/
directory after run the JUM_A.sh? Instead I got a new directory of temp_JUM_A_run
?
from jum.
from jum.
The current directory only have two folders:
drwxr-sr-x 1 root dz33 5274 Jul 25 2018 JUM_2.0.2/
drwxrws---+ 1 dz33 dcistat 80972 Apr 30 15:25 temp_JUM_A_run/
In the temp_JUM_A_run:
-rw-rw---- 1 dz33 dcistat 1520989 Apr 30 15:01 4654-S136_S40_L001_combined_count.txt
-rw-rw---- 1 dz33 dcistat 639706 Apr 30 15:01 4654-S136_S40_L001_junction_counts_intron_retention_counts_exist_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 1519416 Apr 30 15:00 4654-S135_S39_L001_combined_count.txt
-rw-rw---- 1 dz33 dcistat 639540 Apr 30 15:00 4654-S135_S39_L001_junction_counts_intron_retention_counts_exist_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 1521552 Apr 30 15:00 4654-S134_S38_L001_combined_count.txt
-rw-rw---- 1 dz33 dcistat 640278 Apr 30 15:00 4654-S134_S38_L001_junction_counts_intron_retention_counts_exist_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 1517922 Apr 30 15:00 4654-S133_S37_L001_combined_count.txt
-rw-rw---- 1 dz33 dcistat 639030 Apr 30 15:00 4654-S133_S37_L001_junction_counts_intron_retention_counts_exist_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 1517723 Apr 30 15:00 4654-S132_S36_L001_combined_count.txt
-rw-rw---- 1 dz33 dcistat 637953 Apr 30 15:00 4654-S132_S36_L001_junction_counts_intron_retention_counts_exist_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 1516057 Apr 30 15:00 4654-S131_S35_L001_combined_count.txt
-rw-rw---- 1 dz33 dcistat 638359 Apr 30 15:00 4654-S131_S35_L001_junction_counts_intron_retention_counts_exist_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 1519173 Apr 30 15:00 4654-S130_S34_L001_combined_count.txt
-rw-rw---- 1 dz33 dcistat 638821 Apr 30 15:00 4654-S130_S34_L001_junction_counts_intron_retention_counts_exist_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 1517609 Apr 30 15:00 4654-S129_S33_L001_combined_count.txt
-rw-rw---- 1 dz33 dcistat 638594 Apr 30 15:00 4654-S129_S33_L001_junction_counts_intron_retention_counts_exist_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 1519245 Apr 30 15:00 4654-S120_S24_L001_combined_count.txt
-rw-rw---- 1 dz33 dcistat 638435 Apr 30 15:00 4654-S120_S24_L001_junction_counts_intron_retention_counts_exist_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 1517849 Apr 30 15:00 4654-S119_S23_L001_combined_count.txt
-rw-rw---- 1 dz33 dcistat 637961 Apr 30 15:00 4654-S119_S23_L001_junction_counts_intron_retention_counts_exist_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 1520072 Apr 30 15:00 4654-S118_S22_L001_combined_count.txt
-rw-rw---- 1 dz33 dcistat 638886 Apr 30 15:00 4654-S118_S22_L001_junction_counts_intron_retention_counts_exist_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 1516490 Apr 30 15:00 4654-S117_S21_L001_combined_count.txt
-rw-rw---- 1 dz33 dcistat 636874 Apr 30 15:00 4654-S117_S21_L001_junction_counts_intron_retention_counts_exist_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 1518621 Apr 30 15:00 4654-S116_S20_L001_combined_count.txt
-rw-rw---- 1 dz33 dcistat 638582 Apr 30 15:00 4654-S116_S20_L001_junction_counts_intron_retention_counts_exist_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 1519817 Apr 30 15:00 4654-S115_S19_L001_combined_count.txt
-rw-rw---- 1 dz33 dcistat 638533 Apr 30 15:00 4654-S115_S19_L001_junction_counts_intron_retention_counts_exist_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 1517956 Apr 30 15:00 4654-S114_S18_L001_combined_count.txt
-rw-rw---- 1 dz33 dcistat 637339 Apr 30 15:00 4654-S114_S18_L001_junction_counts_intron_retention_counts_exist_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 1517271 Apr 30 15:00 4654-S113_S17_L001_combined_count.txt
-rw-rw---- 1 dz33 dcistat 636816 Apr 30 15:00 4654-S113_S17_L001_junction_counts_intron_retention_counts_exist_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 8395362 Apr 30 15:00 combined_AS_JUM.gff
-rw-rw---- 1 dz33 dcistat 3607998 Apr 30 15:00 output_intron_retention_splicing_event_JUM_annotation.gff
-rw-rw---- 1 dz33 dcistat 453341 Apr 30 15:00 output_intron_retention_splicing_event_second_processing_for_JUM_reference_building.txt
-rw-rw---- 1 dz33 dcistat 964882 Apr 30 15:00 output_intron_retention_splicing_event_first_processing_for_JUM_reference_building.txt
-rw-rw---- 1 dz33 dcistat 906682 Apr 30 15:00 JUM_intron_retention_splicing_event.txt
-rw-rw---- 1 dz33 dcistat 264496 Apr 30 15:00 All_junction_counts_intron_retention_in_all_samples_sorted_list.txt
drwxrws---+ 1 dz33 dcistat 1334 Apr 30 15:00 con2_2/
drwxrws---+ 1 dz33 dcistat 1334 Apr 30 15:00 con1_2/
-rw-rw---- 1 dz33 dcistat 32678095 Apr 30 15:00 4654-S136_S40_L001_junction_counts_combined_intron_retention_event.txt
-rw-rw---- 1 dz33 dcistat 749788 Apr 30 15:00 4654-S136_S40_L001_junction_counts_combined_intron_retention_event_list.txt
-rw-rw---- 1 dz33 dcistat 2970 Apr 30 15:00 4654-S136_S40_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention_list.txt
-rw-rw---- 1 dz33 dcistat 10959241 Apr 30 15:00 4654-S136_S40_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention.txt
-rw-rw---- 1 dz33 dcistat 368274 Apr 30 15:00 4654-S136_S40_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count_list.txt
-rw-rw---- 1 dz33 dcistat 10747868 Apr 30 15:00 4654-S136_S40_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count.txt
-rw-rw---- 1 dz33 dcistat 378544 Apr 30 15:00 4654-S136_S40_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count_list.txt
-rw-rw---- 1 dz33 dcistat 10970986 Apr 30 15:00 4654-S136_S40_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count.txt
-rw-rw---- 1 dz33 dcistat 32652789 Apr 30 15:00 4654-S135_S39_L001_junction_counts_combined_intron_retention_event.txt
-rw-rw---- 1 dz33 dcistat 1113765 Apr 30 15:00 4654-S135_S39_L001_junction_counts_combined_intron_retention_event_list.txt
-rw-rw---- 1 dz33 dcistat 3123 Apr 30 15:00 4654-S135_S39_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention_list.txt
-rw-rw---- 1 dz33 dcistat 10948889 Apr 30 15:00 4654-S135_S39_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention.txt
-rw-rw---- 1 dz33 dcistat 547685 Apr 30 15:00 4654-S135_S39_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count_list.txt
-rw-rw---- 1 dz33 dcistat 10737981 Apr 30 15:00 4654-S135_S39_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count.txt
-rw-rw---- 1 dz33 dcistat 562957 Apr 30 15:00 4654-S135_S39_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count_list.txt
-rw-rw---- 1 dz33 dcistat 10965919 Apr 30 15:00 4654-S135_S39_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count.txt
-rw-rw---- 1 dz33 dcistat 32695112 Apr 30 15:00 4654-S134_S38_L001_junction_counts_combined_intron_retention_event.txt
-rw-rw---- 1 dz33 dcistat 1156242 Apr 30 15:00 4654-S134_S38_L001_junction_counts_combined_intron_retention_event_list.txt
-rw-rw---- 1 dz33 dcistat 3489 Apr 30 15:00 4654-S134_S38_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention_list.txt
-rw-rw---- 1 dz33 dcistat 10961268 Apr 30 15:00 4654-S134_S38_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention.txt
-rw-rw---- 1 dz33 dcistat 568451 Apr 30 15:00 4654-S134_S38_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count_list.txt
-rw-rw---- 1 dz33 dcistat 10754991 Apr 30 15:00 4654-S134_S38_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count.txt
-rw-rw---- 1 dz33 dcistat 584302 Apr 30 15:00 4654-S134_S38_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count_list.txt
-rw-rw---- 1 dz33 dcistat 10978853 Apr 30 15:00 4654-S134_S38_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count.txt
-rw-rw---- 1 dz33 dcistat 32606746 Apr 30 15:00 4654-S133_S37_L001_junction_counts_combined_intron_retention_event.txt
-rw-rw---- 1 dz33 dcistat 778864 Apr 30 15:00 4654-S133_S37_L001_junction_counts_combined_intron_retention_event_list.txt
-rw-rw---- 1 dz33 dcistat 2933 Apr 30 15:00 4654-S133_S37_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention_list.txt
-rw-rw---- 1 dz33 dcistat 10936158 Apr 30 15:00 4654-S133_S37_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention.txt
-rw-rw---- 1 dz33 dcistat 382631 Apr 30 15:00 4654-S133_S37_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count_list.txt
-rw-rw---- 1 dz33 dcistat 10722134 Apr 30 15:00 4654-S133_S37_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count.txt
-rw-rw---- 1 dz33 dcistat 393300 Apr 30 15:00 4654-S133_S37_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count_list.txt
-rw-rw---- 1 dz33 dcistat 10948454 Apr 30 15:00 4654-S133_S37_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count.txt
-rw-rw---- 1 dz33 dcistat 32628928 Apr 30 15:00 4654-S132_S36_L001_junction_counts_combined_intron_retention_event.txt
-rw-rw---- 1 dz33 dcistat 402324 Apr 30 15:00 4654-S132_S36_L001_junction_counts_combined_intron_retention_event_list.txt
-rw-rw---- 1 dz33 dcistat 2459 Apr 30 15:00 4654-S132_S36_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention_list.txt
-rw-rw---- 1 dz33 dcistat 10947305 Apr 30 15:00 4654-S132_S36_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention.txt
-rw-rw---- 1 dz33 dcistat 197183 Apr 30 15:00 4654-S132_S36_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count_list.txt
-rw-rw---- 1 dz33 dcistat 10727387 Apr 30 15:00 4654-S132_S36_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count.txt
-rw-rw---- 1 dz33 dcistat 202682 Apr 30 15:00 4654-S132_S36_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count_list.txt
-rw-rw---- 1 dz33 dcistat 10954236 Apr 30 15:00 4654-S132_S36_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count.txt
-rw-rw---- 1 dz33 dcistat 32558578 Apr 30 15:00 4654-S131_S35_L001_junction_counts_combined_intron_retention_event.txt
-rw-rw---- 1 dz33 dcistat 747794 Apr 30 15:00 4654-S131_S35_L001_junction_counts_combined_intron_retention_event_list.txt
-rw-rw---- 1 dz33 dcistat 2420 Apr 30 15:00 4654-S131_S35_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention_list.txt
-rw-rw---- 1 dz33 dcistat 10921619 Apr 30 15:00 4654-S131_S35_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention.txt
-rw-rw---- 1 dz33 dcistat 367563 Apr 30 15:00 4654-S131_S35_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count_list.txt
-rw-rw---- 1 dz33 dcistat 10703558 Apr 30 15:00 4654-S131_S35_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count.txt
-rw-rw---- 1 dz33 dcistat 377811 Apr 30 15:00 4654-S131_S35_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count_list.txt
-rw-rw---- 1 dz33 dcistat 10933401 Apr 30 15:00 4654-S131_S35_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count.txt
-rw-rw---- 1 dz33 dcistat 32637469 Apr 30 14:59 4654-S130_S34_L001_junction_counts_combined_intron_retention_event.txt
-rw-rw---- 1 dz33 dcistat 450176 Apr 30 14:59 4654-S130_S34_L001_junction_counts_combined_intron_retention_event_list.txt
-rw-rw---- 1 dz33 dcistat 3015 Apr 30 14:59 4654-S130_S34_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention_list.txt
-rw-rw---- 1 dz33 dcistat 10948459 Apr 30 14:59 4654-S130_S34_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention.txt
-rw-rw---- 1 dz33 dcistat 220506 Apr 30 14:59 4654-S130_S34_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count_list.txt
-rw-rw---- 1 dz33 dcistat 10732862 Apr 30 14:59 4654-S130_S34_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count.txt
-rw-rw---- 1 dz33 dcistat 226655 Apr 30 14:59 4654-S130_S34_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count_list.txt
-rw-rw---- 1 dz33 dcistat 10956148 Apr 30 14:59 4654-S130_S34_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count.txt
-rw-rw---- 1 dz33 dcistat 32589260 Apr 30 14:59 4654-S129_S33_L001_junction_counts_combined_intron_retention_event.txt
-rw-rw---- 1 dz33 dcistat 513055 Apr 30 14:59 4654-S129_S33_L001_junction_counts_combined_intron_retention_event_list.txt
-rw-rw---- 1 dz33 dcistat 2347 Apr 30 14:59 4654-S129_S33_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention_list.txt
-rw-rw---- 1 dz33 dcistat 10932973 Apr 30 14:59 4654-S129_S33_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention.txt
-rw-rw---- 1 dz33 dcistat 251843 Apr 30 14:59 4654-S129_S33_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count_list.txt
-rw-rw---- 1 dz33 dcistat 10714802 Apr 30 14:59 4654-S129_S33_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count.txt
-rw-rw---- 1 dz33 dcistat 258865 Apr 30 14:59 4654-S129_S33_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count_list.txt
-rw-rw---- 1 dz33 dcistat 10941485 Apr 30 14:59 4654-S129_S33_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count.txt
-rw-rw---- 1 dz33 dcistat 32667778 Apr 30 14:59 4654-S120_S24_L001_junction_counts_combined_intron_retention_event.txt
-rw-rw---- 1 dz33 dcistat 574358 Apr 30 14:59 4654-S120_S24_L001_junction_counts_combined_intron_retention_event_list.txt
-rw-rw---- 1 dz33 dcistat 2680 Apr 30 14:59 4654-S120_S24_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention_list.txt
-rw-rw---- 1 dz33 dcistat 10956907 Apr 30 14:59 4654-S120_S24_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention.txt
-rw-rw---- 1 dz33 dcistat 281909 Apr 30 14:59 4654-S120_S24_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count_list.txt
-rw-rw---- 1 dz33 dcistat 10744718 Apr 30 14:59 4654-S120_S24_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count.txt
-rw-rw---- 1 dz33 dcistat 289769 Apr 30 14:59 4654-S120_S24_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count_list.txt
-rw-rw---- 1 dz33 dcistat 10966153 Apr 30 14:59 4654-S120_S24_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count.txt
-rw-rw---- 1 dz33 dcistat 32639366 Apr 30 14:59 4654-S119_S23_L001_junction_counts_combined_intron_retention_event.txt
-rw-rw---- 1 dz33 dcistat 697235 Apr 30 14:59 4654-S119_S23_L001_junction_counts_combined_intron_retention_event_list.txt
-rw-rw---- 1 dz33 dcistat 2567 Apr 30 14:59 4654-S119_S23_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention_list.txt
-rw-rw---- 1 dz33 dcistat 10947801 Apr 30 14:59 4654-S119_S23_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention.txt
-rw-rw---- 1 dz33 dcistat 342558 Apr 30 14:59 4654-S119_S23_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count_list.txt
-rw-rw---- 1 dz33 dcistat 10732612 Apr 30 14:59 4654-S119_S23_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count.txt
-rw-rw---- 1 dz33 dcistat 352110 Apr 30 14:59 4654-S119_S23_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count_list.txt
-rw-rw---- 1 dz33 dcistat 10958953 Apr 30 14:59 4654-S119_S23_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count.txt
-rw-rw---- 1 dz33 dcistat 32703452 Apr 30 14:59 4654-S118_S22_L001_junction_counts_combined_intron_retention_event.txt
-rw-rw---- 1 dz33 dcistat 836320 Apr 30 14:59 4654-S118_S22_L001_junction_counts_combined_intron_retention_event_list.txt
-rw-rw---- 1 dz33 dcistat 2976 Apr 30 14:59 4654-S118_S22_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention_list.txt
-rw-rw---- 1 dz33 dcistat 10968725 Apr 30 14:59 4654-S118_S22_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention.txt
-rw-rw---- 1 dz33 dcistat 410943 Apr 30 14:59 4654-S118_S22_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count_list.txt
-rw-rw---- 1 dz33 dcistat 10753042 Apr 30 14:59 4654-S118_S22_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count.txt
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-rw-rw---- 1 dz33 dcistat 10981685 Apr 30 14:59 4654-S118_S22_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count.txt
-rw-rw---- 1 dz33 dcistat 32592670 Apr 30 14:59 4654-S117_S21_L001_junction_counts_combined_intron_retention_event.txt
-rw-rw---- 1 dz33 dcistat 250396 Apr 30 14:59 4654-S117_S21_L001_junction_counts_combined_intron_retention_event_list.txt
-rw-rw---- 1 dz33 dcistat 2199 Apr 30 14:59 4654-S117_S21_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention_list.txt
-rw-rw---- 1 dz33 dcistat 10935948 Apr 30 14:59 4654-S117_S21_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention.txt
-rw-rw---- 1 dz33 dcistat 122392 Apr 30 14:59 4654-S117_S21_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count_list.txt
-rw-rw---- 1 dz33 dcistat 10715692 Apr 30 14:59 4654-S117_S21_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count.txt
-rw-rw---- 1 dz33 dcistat 125805 Apr 30 14:59 4654-S117_S21_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count_list.txt
-rw-rw---- 1 dz33 dcistat 10941030 Apr 30 14:59 4654-S117_S21_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count.txt
-rw-rw---- 1 dz33 dcistat 32612894 Apr 30 14:59 4654-S116_S20_L001_junction_counts_combined_intron_retention_event.txt
-rw-rw---- 1 dz33 dcistat 446522 Apr 30 14:59 4654-S116_S20_L001_junction_counts_combined_intron_retention_event_list.txt
-rw-rw---- 1 dz33 dcistat 2750 Apr 30 14:59 4654-S116_S20_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention_list.txt
-rw-rw---- 1 dz33 dcistat 10940261 Apr 30 14:59 4654-S116_S20_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention.txt
-rw-rw---- 1 dz33 dcistat 218835 Apr 30 14:59 4654-S116_S20_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count_list.txt
-rw-rw---- 1 dz33 dcistat 10724741 Apr 30 14:59 4654-S116_S20_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count.txt
-rw-rw---- 1 dz33 dcistat 224937 Apr 30 14:59 4654-S116_S20_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count_list.txt
-rw-rw---- 1 dz33 dcistat 10947892 Apr 30 14:59 4654-S116_S20_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count.txt
-rw-rw---- 1 dz33 dcistat 32684961 Apr 30 14:59 4654-S115_S19_L001_junction_counts_combined_intron_retention_event.txt
-rw-rw---- 1 dz33 dcistat 649286 Apr 30 14:59 4654-S115_S19_L001_junction_counts_combined_intron_retention_event_list.txt
-rw-rw---- 1 dz33 dcistat 2790 Apr 30 14:59 4654-S115_S19_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention_list.txt
-rw-rw---- 1 dz33 dcistat 10962172 Apr 30 14:59 4654-S115_S19_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention.txt
-rw-rw---- 1 dz33 dcistat 318803 Apr 30 14:59 4654-S115_S19_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count_list.txt
-rw-rw---- 1 dz33 dcistat 10750334 Apr 30 14:59 4654-S115_S19_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count.txt
-rw-rw---- 1 dz33 dcistat 327693 Apr 30 14:59 4654-S115_S19_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count_list.txt
-rw-rw---- 1 dz33 dcistat 10972455 Apr 30 14:59 4654-S115_S19_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count.txt
-rw-rw---- 1 dz33 dcistat 32655388 Apr 30 14:59 4654-S114_S18_L001_junction_counts_combined_intron_retention_event.txt
-rw-rw---- 1 dz33 dcistat 325691 Apr 30 14:59 4654-S114_S18_L001_junction_counts_combined_intron_retention_event_list.txt
-rw-rw---- 1 dz33 dcistat 2676 Apr 30 14:59 4654-S114_S18_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention_list.txt
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-rw-rw---- 1 dz33 dcistat 159287 Apr 30 14:59 4654-S114_S18_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count_list.txt
-rw-rw---- 1 dz33 dcistat 10740405 Apr 30 14:59 4654-S114_S18_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count.txt
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-rw-rw---- 1 dz33 dcistat 10960457 Apr 30 14:59 4654-S114_S18_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count.txt
-rw-rw---- 1 dz33 dcistat 32630555 Apr 30 14:59 4654-S113_S17_L001_junction_counts_combined_intron_retention_event.txt
-rw-rw---- 1 dz33 dcistat 300408 Apr 30 14:59 4654-S113_S17_L001_junction_counts_combined_intron_retention_event_list.txt
-rw-rw---- 1 dz33 dcistat 2612 Apr 30 14:59 4654-S113_S17_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention_list.txt
-rw-rw---- 1 dz33 dcistat 10948495 Apr 30 14:59 4654-S113_S17_L001_junction_counts_more_than_8_in_all_samples_short_intron_retention.txt
-rw-rw---- 1 dz33 dcistat 146851 Apr 30 14:59 4654-S113_S17_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count_list.txt
-rw-rw---- 1 dz33 dcistat 10727842 Apr 30 14:59 4654-S113_S17_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_left_count.txt
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-rw-rw---- 1 dz33 dcistat 10954218 Apr 30 14:59 4654-S113_S17_L001_junction_counts_more_than_8_in_all_samples_long_intron_retention_right_count.txt
-rw-rw---- 1 dz33 dcistat 245413 Apr 30 14:59 4654-S134_S38_L001Aligned.out_intersect_short_intron_count_table
-rw-rw---- 1 dz33 dcistat 54 Apr 30 14:59 4654-S134_S38_L001Aligned.out_intersect_short_intron2_count_table
-rw-rw---- 1 dz33 dcistat 489 Apr 30 14:59 4654-S134_S38_L001Aligned.out_intersect_short_intron2_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 489 Apr 30 14:59 4654-S134_S38_L001Aligned.out_intersect_short_intron2_edited.txt
-rw-rw---- 1 dz33 dcistat 245359 Apr 30 14:59 4654-S134_S38_L001Aligned.out_intersect_short_intron1_count_table
-rw-rw---- 1 dz33 dcistat 54 Apr 30 14:59 4654-S136_S40_L001Aligned.out_intersect_short_intron2_count_table
-rw-rw---- 1 dz33 dcistat 245402 Apr 30 14:59 4654-S136_S40_L001Aligned.out_intersect_short_intron_count_table
-rw-rw---- 1 dz33 dcistat 0 Apr 30 14:59 4654-S136_S40_L001Aligned.out_intersect_short_intron2_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 0 Apr 30 14:59 4654-S136_S40_L001Aligned.out_intersect_short_intron2_edited.txt
-rw-rw---- 1 dz33 dcistat 245395 Apr 30 14:59 4654-S133_S37_L001Aligned.out_intersect_short_intron_count_table
-rw-rw---- 1 dz33 dcistat 10234484 Apr 30 14:59 4654-S134_S38_L001Aligned.out_intersect_short_intron1_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 245348 Apr 30 14:59 4654-S136_S40_L001Aligned.out_intersect_short_intron1_count_table
-rw-rw---- 1 dz33 dcistat 54 Apr 30 14:59 4654-S133_S37_L001Aligned.out_intersect_short_intron2_count_table
-rw-rw---- 1 dz33 dcistat 0 Apr 30 14:59 4654-S133_S37_L001Aligned.out_intersect_short_intron2_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 0 Apr 30 14:59 4654-S133_S37_L001Aligned.out_intersect_short_intron2_edited.txt
-rw-rw---- 1 dz33 dcistat 245341 Apr 30 14:59 4654-S133_S37_L001Aligned.out_intersect_short_intron1_count_table
-rw-rw---- 1 dz33 dcistat 245403 Apr 30 14:59 4654-S135_S39_L001Aligned.out_intersect_short_intron_count_table
-rw-rw---- 1 dz33 dcistat 55 Apr 30 14:59 4654-S135_S39_L001Aligned.out_intersect_short_intron2_count_table
-rw-rw---- 1 dz33 dcistat 767 Apr 30 14:59 4654-S135_S39_L001Aligned.out_intersect_short_intron2_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 767 Apr 30 14:59 4654-S135_S39_L001Aligned.out_intersect_short_intron2_edited.txt
-rw-rw---- 1 dz33 dcistat 245391 Apr 30 14:59 4654-S114_S18_L001Aligned.out_intersect_short_intron_count_table
-rw-rw---- 1 dz33 dcistat 54 Apr 30 14:59 4654-S114_S18_L001Aligned.out_intersect_short_intron2_count_table
-rw-rw---- 1 dz33 dcistat 71 Apr 30 14:59 4654-S114_S18_L001Aligned.out_intersect_short_intron2_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 71 Apr 30 14:59 4654-S114_S18_L001Aligned.out_intersect_short_intron2_edited.txt
-rw-rw---- 1 dz33 dcistat 245348 Apr 30 14:59 4654-S135_S39_L001Aligned.out_intersect_short_intron1_count_table
-rw-rw---- 1 dz33 dcistat 245337 Apr 30 14:59 4654-S114_S18_L001Aligned.out_intersect_short_intron1_count_table
-rw-rw---- 1 dz33 dcistat 9125091 Apr 30 14:59 4654-S136_S40_L001Aligned.out_intersect_short_intron1_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 9126749 Apr 30 14:59 4654-S133_S37_L001Aligned.out_intersect_short_intron1_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 8541050 Apr 30 14:59 4654-S135_S39_L001Aligned.out_intersect_short_intron1_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 8264528 Apr 30 14:59 4654-S114_S18_L001Aligned.out_intersect_short_intron1_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 55 Apr 30 14:59 4654-S116_S20_L001Aligned.out_intersect_short_intron2_count_table
-rw-rw---- 1 dz33 dcistat 245397 Apr 30 14:59 4654-S116_S20_L001Aligned.out_intersect_short_intron_count_table
-rw-rw---- 1 dz33 dcistat 906 Apr 30 14:59 4654-S116_S20_L001Aligned.out_intersect_short_intron2_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 906 Apr 30 14:59 4654-S116_S20_L001Aligned.out_intersect_short_intron2_edited.txt
-rw-rw---- 1 dz33 dcistat 245342 Apr 30 14:59 4654-S116_S20_L001Aligned.out_intersect_short_intron1_count_table
-rw-rw---- 1 dz33 dcistat 245386 Apr 30 14:59 4654-S132_S36_L001Aligned.out_intersect_short_intron_count_table
-rw-rw---- 1 dz33 dcistat 54 Apr 30 14:59 4654-S132_S36_L001Aligned.out_intersect_short_intron2_count_table
-rw-rw---- 1 dz33 dcistat 346 Apr 30 14:59 4654-S132_S36_L001Aligned.out_intersect_short_intron2_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 346 Apr 30 14:59 4654-S132_S36_L001Aligned.out_intersect_short_intron2_edited.txt
-rw-rw---- 1 dz33 dcistat 6469808 Apr 30 14:59 4654-S116_S20_L001Aligned.out_intersect_short_intron1_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 245332 Apr 30 14:59 4654-S132_S36_L001Aligned.out_intersect_short_intron1_count_table
-rw-rw---- 1 dz33 dcistat 245389 Apr 30 14:59 4654-S119_S23_L001Aligned.out_intersect_short_intron_count_table
-rw-rw---- 1 dz33 dcistat 55 Apr 30 14:59 4654-S119_S23_L001Aligned.out_intersect_short_intron2_count_table
-rw-rw---- 1 dz33 dcistat 1667 Apr 30 14:59 4654-S119_S23_L001Aligned.out_intersect_short_intron2_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 1667 Apr 30 14:59 4654-S119_S23_L001Aligned.out_intersect_short_intron2_edited.txt
-rw-rw---- 1 dz33 dcistat 245334 Apr 30 14:59 4654-S119_S23_L001Aligned.out_intersect_short_intron1_count_table
-rw-rw---- 1 dz33 dcistat 54 Apr 30 14:59 4654-S120_S24_L001Aligned.out_intersect_short_intron2_count_table
-rw-rw---- 1 dz33 dcistat 245389 Apr 30 14:59 4654-S120_S24_L001Aligned.out_intersect_short_intron_count_table
-rw-rw---- 1 dz33 dcistat 622 Apr 30 14:59 4654-S120_S24_L001Aligned.out_intersect_short_intron2_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 622 Apr 30 14:59 4654-S120_S24_L001Aligned.out_intersect_short_intron2_edited.txt
-rw-rw---- 1 dz33 dcistat 245391 Apr 30 14:59 4654-S113_S17_L001Aligned.out_intersect_short_intron_count_table
-rw-rw---- 1 dz33 dcistat 245385 Apr 30 14:59 4654-S117_S21_L001Aligned.out_intersect_short_intron_count_table
-rw-rw---- 1 dz33 dcistat 54 Apr 30 14:59 4654-S113_S17_L001Aligned.out_intersect_short_intron2_count_table
-rw-rw---- 1 dz33 dcistat 54 Apr 30 14:59 4654-S117_S21_L001Aligned.out_intersect_short_intron2_count_table
-rw-rw---- 1 dz33 dcistat 628 Apr 30 14:59 4654-S113_S17_L001Aligned.out_intersect_short_intron2_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 628 Apr 30 14:59 4654-S113_S17_L001Aligned.out_intersect_short_intron2_edited.txt
-rw-rw---- 1 dz33 dcistat 489 Apr 30 14:59 4654-S117_S21_L001Aligned.out_intersect_short_intron2_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 489 Apr 30 14:59 4654-S117_S21_L001Aligned.out_intersect_short_intron2_edited.txt
-rw-rw---- 1 dz33 dcistat 245331 Apr 30 14:59 4654-S117_S21_L001Aligned.out_intersect_short_intron1_count_table
-rw-rw---- 1 dz33 dcistat 245399 Apr 30 14:59 4654-S130_S34_L001Aligned.out_intersect_short_intron_count_table
-rw-rw---- 1 dz33 dcistat 245335 Apr 30 14:59 4654-S120_S24_L001Aligned.out_intersect_short_intron1_count_table
-rw-rw---- 1 dz33 dcistat 245337 Apr 30 14:59 4654-S113_S17_L001Aligned.out_intersect_short_intron1_count_table
-rw-rw---- 1 dz33 dcistat 5611593 Apr 30 14:59 4654-S132_S36_L001Aligned.out_intersect_short_intron1_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 55 Apr 30 14:59 4654-S115_S19_L001Aligned.out_intersect_short_intron2_count_table
-rw-rw---- 1 dz33 dcistat 245394 Apr 30 14:59 4654-S115_S19_L001Aligned.out_intersect_short_intron_count_table
-rw-rw---- 1 dz33 dcistat 54 Apr 30 14:59 4654-S130_S34_L001Aligned.out_intersect_short_intron2_count_table
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-rw-rw---- 1 dz33 dcistat 695 Apr 30 14:59 4654-S130_S34_L001Aligned.out_intersect_short_intron2_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 695 Apr 30 14:59 4654-S130_S34_L001Aligned.out_intersect_short_intron2_edited.txt
-rw-rw---- 1 dz33 dcistat 5457869 Apr 30 14:59 4654-S119_S23_L001Aligned.out_intersect_short_intron1_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 245389 Apr 30 14:59 4654-S118_S22_L001Aligned.out_intersect_short_intron_count_table
-rw-rw---- 1 dz33 dcistat 1455 Apr 30 14:59 4654-S115_S19_L001Aligned.out_intersect_short_intron2_edited.txt
-rw-rw---- 1 dz33 dcistat 5201721 Apr 30 14:59 4654-S117_S21_L001Aligned.out_intersect_short_intron1_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 245345 Apr 30 14:59 4654-S130_S34_L001Aligned.out_intersect_short_intron1_count_table
-rw-rw---- 1 dz33 dcistat 5192845 Apr 30 14:59 4654-S113_S17_L001Aligned.out_intersect_short_intron1_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 54 Apr 30 14:59 4654-S118_S22_L001Aligned.out_intersect_short_intron2_count_table
-rw-rw---- 1 dz33 dcistat 5166628 Apr 30 14:59 4654-S120_S24_L001Aligned.out_intersect_short_intron1_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 279 Apr 30 14:59 4654-S118_S22_L001Aligned.out_intersect_short_intron2_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 279 Apr 30 14:59 4654-S118_S22_L001Aligned.out_intersect_short_intron2_edited.txt
-rw-rw---- 1 dz33 dcistat 245335 Apr 30 14:59 4654-S118_S22_L001Aligned.out_intersect_short_intron1_count_table
-rw-rw---- 1 dz33 dcistat 245339 Apr 30 14:59 4654-S115_S19_L001Aligned.out_intersect_short_intron1_count_table
-rw-rw---- 1 dz33 dcistat 245383 Apr 30 14:59 4654-S129_S33_L001Aligned.out_intersect_short_intron_count_table
-rw-rw---- 1 dz33 dcistat 555 Apr 30 14:59 4654-S129_S33_L001Aligned.out_intersect_short_intron2_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 54 Apr 30 14:59 4654-S129_S33_L001Aligned.out_intersect_short_intron2_count_table
-rw-rw---- 1 dz33 dcistat 555 Apr 30 14:59 4654-S129_S33_L001Aligned.out_intersect_short_intron2_edited.txt
-rw-rw---- 1 dz33 dcistat 54 Apr 30 14:59 4654-S131_S35_L001Aligned.out_intersect_short_intron2_count_table
-rw-rw---- 1 dz33 dcistat 245384 Apr 30 14:59 4654-S131_S35_L001Aligned.out_intersect_short_intron_count_table
-rw-rw---- 1 dz33 dcistat 278 Apr 30 14:59 4654-S131_S35_L001Aligned.out_intersect_short_intron2_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 245329 Apr 30 14:59 4654-S129_S33_L001Aligned.out_intersect_short_intron1_count_table
-rw-rw---- 1 dz33 dcistat 278 Apr 30 14:59 4654-S131_S35_L001Aligned.out_intersect_short_intron2_edited.txt
-rw-rw---- 1 dz33 dcistat 245330 Apr 30 14:59 4654-S131_S35_L001Aligned.out_intersect_short_intron1_count_table
-rw-rw---- 1 dz33 dcistat 4427553 Apr 30 14:59 4654-S130_S34_L001Aligned.out_intersect_short_intron1_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 4393955 Apr 30 14:59 4654-S115_S19_L001Aligned.out_intersect_short_intron1_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 4420085 Apr 30 14:59 4654-S118_S22_L001Aligned.out_intersect_short_intron1_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 4276204 Apr 30 14:59 4654-S129_S33_L001Aligned.out_intersect_short_intron1_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 3984429 Apr 30 14:59 4654-S131_S35_L001Aligned.out_intersect_short_intron1_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 4504316 Apr 30 14:59 4654-S134_S38_L001Aligned.out_intersect_long_intron_count_table
-rw-rw---- 1 dz33 dcistat 4484959 Apr 30 14:59 4654-S116_S20_L001Aligned.out_intersect_long_intron_count_table
-rw-rw---- 1 dz33 dcistat 4491223 Apr 30 14:59 4654-S133_S37_L001Aligned.out_intersect_long_intron_count_table
-rw-rw---- 1 dz33 dcistat 4489955 Apr 30 14:59 4654-S120_S24_L001Aligned.out_intersect_long_intron_count_table
-rw-rw---- 1 dz33 dcistat 4483245 Apr 30 14:59 4654-S129_S33_L001Aligned.out_intersect_long_intron_count_table
-rw-rw---- 1 dz33 dcistat 4477629 Apr 30 14:59 4654-S117_S21_L001Aligned.out_intersect_long_intron_count_table
-rw-rw---- 1 dz33 dcistat 319090414 Apr 30 14:59 4654-S134_S38_L001Aligned.out_intersect_long_intron_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 4493299 Apr 30 14:59 4654-S136_S40_L001Aligned.out_intersect_long_intron_count_table
-rw-rw---- 1 dz33 dcistat 4485049 Apr 30 14:59 4654-S130_S34_L001Aligned.out_intersect_long_intron_count_table
-rw-rw---- 1 dz33 dcistat 4484697 Apr 30 14:59 4654-S114_S18_L001Aligned.out_intersect_long_intron_count_table
-rw-rw---- 1 dz33 dcistat 282121376 Apr 30 14:59 4654-S116_S20_L001Aligned.out_intersect_long_intron_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 283402474 Apr 30 14:59 4654-S133_S37_L001Aligned.out_intersect_long_intron_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 4491375 Apr 30 14:59 4654-S115_S19_L001Aligned.out_intersect_long_intron_count_table
-rw-rw---- 1 dz33 dcistat 282429397 Apr 30 14:59 4654-S120_S24_L001Aligned.out_intersect_long_intron_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 4486577 Apr 30 14:59 4654-S131_S35_L001Aligned.out_intersect_long_intron_count_table
-rw-rw---- 1 dz33 dcistat 4499087 Apr 30 14:59 4654-S135_S39_L001Aligned.out_intersect_long_intron_count_table
-rw-rw---- 1 dz33 dcistat 253937508 Apr 30 14:59 4654-S117_S21_L001Aligned.out_intersect_long_intron_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 260623766 Apr 30 14:59 4654-S129_S33_L001Aligned.out_intersect_long_intron_chr_coor.txt
-rw-rw---- 1 dz33 dcistat 4488803 Apr 30 14:59 4654-S119_S23_L001Aligned.out_intersect_long_intron_count_table
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-rw-rw---- 1 dz33 dcistat 6050726 Apr 30 14:20 4654-S129_S33_L001_junction_counts_more_than_8_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 10890963 Apr 30 14:20 profiled_4654-S129_S33_L001_Aligned.out.spanning_junction_reads_junction_overhang_mapped_num.txt
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-rw-rw---- 1 dz33 dcistat 7411907 Apr 30 14:18 4654-S131_S35_L001_junction_counts_more_than_8_in_all_samples_with_both_overhangs.txt
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-rw-rw---- 1 dz33 dcistat 6040709 Apr 30 14:18 4654-S131_S35_L001_junction_counts_more_than_8_in_all_samples.txt
-rw-rw---- 1 dz33 dcistat 10488834 Apr 30 14:18 profiled_4654-S131_S35_L001_Aligned.out.spanning_junction_reads_junction_overhang_mapped_num.txt
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drwxrws---+ 1 dz33 dcistat 2578 Apr 30 13:23 con2_1/
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-rw-rw---- 1 root dcistat 11332346 Apr 5 14:33 4654-S136_S40_L001SJ.out.tab
-rw-rw---- 1 root dcistat 6049884142 Apr 5 14:33 4654-S136_S40_L001Aligned.out_sorted.bam
-rw-rw---- 1 root dcistat 11207007 Apr 5 14:32 4654-S135_S39_L001SJ.out.tab
-rw-rw---- 1 root dcistat 5635195742 Apr 5 14:32 4654-S135_S39_L001Aligned.out_sorted.bam
-rw-rw---- 1 root dcistat 11779048 Apr 5 14:31 4654-S134_S38_L001SJ.out.tab
-rw-rw---- 1 root dcistat 6657829883 Apr 5 14:31 4654-S134_S38_L001Aligned.out_sorted.bam
-rw-rw---- 1 root dcistat 10812853 Apr 5 14:31 4654-S133_S37_L001SJ.out.tab
-rw-rw---- 1 root dcistat 5253935326 Apr 5 14:31 4654-S133_S37_L001Aligned.out_sorted.bam
-rw-rw---- 1 root dcistat 10925660 Apr 5 14:30 4654-S132_S36_L001SJ.out.tab
-rw-rw---- 1 root dcistat 5040146315 Apr 5 14:30 4654-S132_S36_L001Aligned.out_sorted.bam
-rw-rw---- 1 root dcistat 10418258 Apr 5 14:29 4654-S131_S35_L001SJ.out.tab
-rw-rw---- 1 root dcistat 4567350036 Apr 5 14:29 4654-S131_S35_L001Aligned.out_sorted.bam
-rw-rw---- 1 root dcistat 10617351 Apr 5 14:28 4654-S130_S34_L001SJ.out.tab
-rw-rw---- 1 root dcistat 5163908447 Apr 5 14:28 4654-S130_S34_L001Aligned.out_sorted.bam
-rw-rw---- 1 root dcistat 10635732 Apr 5 14:27 4654-S129_S33_L001SJ.out.tab
-rw-rw---- 1 root dcistat 4638363330 Apr 5 14:27 4654-S129_S33_L001Aligned.out_sorted.bam
-rw-rw---- 1 root dcistat 10375315 Apr 5 14:26 4654-S120_S24_L001SJ.out.tab
-rw-rw---- 1 root dcistat 6041356332 Apr 5 14:26 4654-S120_S24_L001Aligned.out_sorted.bam
-rw-rw---- 1 root dcistat 10479535 Apr 5 14:25 4654-S119_S23_L001SJ.out.tab
-rw-rw---- 1 root dcistat 5372589955 Apr 5 14:25 4654-S119_S23_L001Aligned.out_sorted.bam
-rw-rw---- 1 root dcistat 11443433 Apr 5 14:24 4654-S118_S22_L001SJ.out.tab
-rw-rw---- 1 root dcistat 6708048660 Apr 5 14:24 4654-S118_S22_L001Aligned.out_sorted.bam
-rw-rw---- 1 root dcistat 10184266 Apr 5 14:23 4654-S117_S21_L001SJ.out.tab
-rw-rw---- 1 root dcistat 4991508012 Apr 5 14:23 4654-S117_S21_L001Aligned.out_sorted.bam
-rw-rw---- 1 root dcistat 10079900 Apr 5 14:22 4654-S116_S20_L001SJ.out.tab
-rw-rw---- 1 root dcistat 5353504888 Apr 5 14:22 4654-S116_S20_L001Aligned.out_sorted.bam
-rw-rw---- 1 root dcistat 10847415 Apr 5 14:21 4654-S115_S19_L001SJ.out.tab
-rw-rw---- 1 root dcistat 5832351256 Apr 5 14:21 4654-S115_S19_L001Aligned.out_sorted.bam
-rw-rw---- 1 root dcistat 10199081 Apr 5 14:20 4654-S114_S18_L001SJ.out.tab
-rw-rw---- 1 root dcistat 5734624045 Apr 5 14:20 4654-S114_S18_L001Aligned.out_sorted.bam
-rw-rw---- 1 root dcistat 9998214 Apr 5 14:19 4654-S113_S17_L001SJ.out.tab
-rw-rw---- 1 root dcistat 5534011228 Apr 5 14:19 4654-S113_S17_L001Aligned.out_sorted.bam
from jum.
from jum.
I saw this message at the end "move JUM_2.0.2/ to temp_JUM_A_run/ permission denied" but if temp_JUM_A_run/ can be created why it isn't writable. I saw both directories I have rwx permissions.
from jum.
from jum.
Thank you very much! Will try it and let you know.
from jum.
Related Issues (20)
- The length of the RNA-seq reads is inconsistent
- Can JUM be run on a single bam file ( only one treatment bam or only one control bam) HOT 6
- PSI values per condition HOT 1
- error occurred when running JUM_B.sh HOT 1
- Recommendations for sequencing depth HOT 1
- JUM output Splicing events Visualization tools HOT 1
- Correcting for batch effects while running JUM HOT 1
- JUM (v2.0.2 and up) stops and get killed at a certain step HOT 6
- Error of Rscript at write.table step HOT 1
- filtering outputs from cutoff p-value=1 HOT 3
- perl errors while running JUM_B HOT 1
- Perl Error due to a sample not having AS on one contig HOT 2
- JUM a lot of error... but finish runnnig an output empty file. HOT 1
- _trash_out file should be empty! HOT 2
- Regarding delta-PSI value, control-treatment vs treatment-control HOT 1
- Regarding Error "NONE" after running JUM_C.sh HOT 1
- JUM_A: ERROR: ... not sorted lexicographically HOT 1
- Error when running JUM_A.sh
- JUM_2-3.sh missing in JUM_3.0.0
- Error when running JUM step A HOT 21
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