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fastqc_pdf's Introduction

fastqc_pdf Tool

Run FASTQC tool on large number of samples (fastq) parallelly.

Advantage of fastqc_pdf tool:

  1. Multithreading is added to run on larger samples (You can you use the maximum CPU cores in QC) in order to save time.
  2. It generates PDF reports after each QC step instead of HTML reports.

Dependencies to install:

Download FastQC, add executable permision to fastqc and add the path in .bashrc file.

pip3 install weasyprint

sudo apt install parallel

Download and run fastqc_pdf

git clone https://github.com/ranjanjs34/fastqc_pdf.git

cd fastqc_pdf

chmod +x ./fastqc_pdf

Execute the binary as: ./fastqc_pdf

Citation: Andrews, S. (2010). FastQC: A Quality Control Tool for High Throughput Sequence Data [Online].

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