realityjunky Goto Github PK

afterqc

Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data

awesome-bio-datasets

awesome-bio-datasets

bayesmoda

pymc3 model for combining expert rater judgments from the MODA sleep spindle dataset.

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

berkeleydeeprlcource-homework

Assignments for CS294-112.

bioawk

BWK awk modified for biological data

bpadictionary

Data dictionary for the Blood PAC Commons

btmsi-cast

cfdnapattern

Pattern Recognition for Cell-free DNA

coding-guide

自己随手记录的东西

cython

A Python to C compiler

dl-workshop

Crash course to master gradient-based machine learning. Also secretly a JAX course in disguise!

duplex-sequencing

fusiondirect.jl

Detect gene fusion directly from raw fastq files

genbioconductor

Materials for Genomics Data Science: Introduction to Bioconductor

handson-ml

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.

homebrew-core

:beers: Core formulae for the Homebrew package manager

hts-specs

Specifications of SAM/BAM and related high-throughput sequencing file formats

htslib.jl

HTSLIB.jl is a julia wrapper of htslib for accessing common high-throughput sequencing data file formats such as BAM/SAM files

jmcglone.github.io

Data for jmcglone.com. Includes customization of Bootstrap 3.0. Blog and pages generated by Jekyll. Hosted on GitHub.

minibatch_test

mixed_hmc

mojombo.github.io

Jekyll source for my personal blog.

mrbam

Query Mutated Reads from a Bam

mutationscan

(Please use MutScan instead) MutationScan is a project implemented by pure Rust language for searching mutation point(s) directly in fastq files (support single-end or pair-end)

mutscan

Detect important mutations by scanning FastQ files directly

nucleosome_ctdna

Inferring expressed genes by whole-genome sequencing of plasma DNA

numpy-ml

Machine learning, in numpy

oncotator

opengene.jl

OpenGene, core libraries for NGS data analysis and bioinformatics in julia