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Hongyu Xie's Projects

pgmax icon pgmax

Loopy belief propagation for factor graphs on discrete variables in JAX

pymc icon pymc

Bayesian Modeling and Probabilistic Programming in Python

rtg-tools icon rtg-tools

RTG Tools: Utilities for accurate VCF comparison and manipulation

samtools icon samtools

Tools (written in C using htslib) for manipulating next-generation sequencing data

scvi-tools icon scvi-tools

Deep probabilistic analysis of single-cell omics data

seqmaker.jl icon seqmaker.jl

Next Generation Sequencing Simulation with SNP, Variation and Sequencing Error Integrated

seqtk icon seqtk

Toolkit for processing sequences in FASTA/Q formats

sr2-solutions icon sr2-solutions

Solutions to exercises and homework for the second edition of Statistical Rethinking

tensorflow icon tensorflow

Computation using data flow graphs for scalable machine learning

varscan icon varscan

Cloned from https://sourceforge.net/projects/varscan, with possible improvement

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