remi-gau / bids-apps.github.io

Portable neuroimaging pipelines that understand BIDS datasets

This is the repository for generating the BIDS Apps website.

See out CONTRIBUTING guidelines to see how you can help.

Want to learn more about working with BIDS? Have a question, comment, or suggestion?

1. Read some introductory material, most likely the very basic problems have already been addressed!

• BIDS Starter Kit for tutorials, wikis, templates, ...

2. Post your question in one of several channels where BIDS members are active

• the NeuroStars discourse forum
• the BrainHack Mattermost, for instant messaging (see also this news item)
• the Google group, for broader discussions surrounding BIDS
• the specification repository issue page, if you found inconsistencies, typos, or other issues with the BIDS specification itself

Dashboard

Status of the default branch of each app.

name	status	ci	last commit	version
bids-apps/afni_proc	active
bids-apps/antsCorticalThickness	active
bids-apps/baracus	active
bids-apps/brainiak-srm	active
bids-apps/BrainSuite	active
bids-apps/BROCCOLI	active
bids-apps/CPAC	active
bids-apps/DPARSF	active
bids-apps/example	active
bids-apps/freesurfer	active
bids-apps/giga_connectome	active
bids-apps/HCPPipelines	active
bids-apps/hyperalignment	active
bids-apps/MAGeTbrain	active
bids-apps/mindboggle	active
bids-apps/MRtrix3_connectome	active
bids-apps/ndmg	active
bids-apps/nipypelines	active
bids-apps/oppni	active
bids-apps/PyMVPA	active
bids-apps/QAP	active
bids-apps/rsHRF	active
bids-apps/SPM	active
bids-apps/tracula	active
bids-apps/aa	unmaintained
bids-apps/FibreDensityAndCrosssection	unmaintained
bids-apps/niak	unmaintained
bids-apps/rs_signal_extract	unmaintained
cpp-lln-lab/bidsMReye	active
cpp-lln-lab/bidspm	active
djarecka/fmriprep-fake	active
khanlab/funcmasker-flex	active
trendscenter/gift-bids	active
khanlab/hippunfold	active
MICA-MNI/micapipe	active
nipreps/fmriprep	active
nipreps/dmriprep	active
nipreps/mriqc	active
nipreps/nibabies	active
nipreps/nirodents	active
nipreps/smriprep	active
PeerHerholz/BIDSonym	active
PennLINC/aslprep	active
PennLINC/xcp_d	active
PennLINC/qsiprep	active
poldracklab/fitlins	active
connectomicslab/connectomemapper3	active
sebastientourbier/multiscalebrainparcellator	active
Medical-Image-Analysis-Laboratory/mialsuperresolutiontoolkit	active