samples from samplesheet.yml are not reported about porecov

[replikation]

• should be doable if a sample input file is provided.

[hoelzer]

• should be doable if a sample input file is provided.

Yes exactly, we would specifically need this in case a sample sheet is provided. It would be sufficient to add samples missing in the final output (bc/ no consensus was constructed) to the report (HTML, XLSX, {C,T}SV) - e.g. a row that just has the ID and all other columns are 'NA' or something like 'No consensus reconstructed due to low read amount'.

I was thinking about how to add this but I think w/ some channel magic you are faster, @replikation ? :)

[RaverJay]

On it