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accept's Issues

KeepMeds and KeepSGRQ options are not working in accept2

> library(accept)
> patient <- samplePatients[,1]
> accept2(patient, KeepSGRQ = F)
Warning: You are using a simplified version of the model that does not include St. George Respiratory Questionnaire. See the manuscript for more details.
 Error in format_error_bullets(x[-1]) : 
  nms %in% c("i", "x", "") are not all TRUE 
> accept2(patient, KeepMeds = F)
Warning: You are using a simplified version of the model that does not include medications. See the manuscript for more details.
 Error in format_error_bullets(x[-1]) : 
  nms %in% c("i", "x", "") are not all TRUE 

Probabilities

Check exac and severe exac probabilities and make sure they are calculated the same way as in validateAccept

Slow to run

Should vectorise Bayesian implementation of the history?

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