retune-commons Goto Github PK

.github

antx2

Registration of animal MR brain data to a standard (published) atlas. The pipeline works with invivo or exvivo (skull-stripped) MR-data for the following species: mouse, rat, Etruscan shrew and cat. *OS: Windows, MAC, Linux. *Matlab: R2016a or later.

b03

bart

#TESTMODE# Atlas registration to single histological slice (warps atlas onto slice, cell counting, calculation of cell density for observed region)

bids-specification

Brain Imaging Data Structure (BIDS) Specification

bsi-zoo

A brain source imaging zoo!

cebra

Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

dyngdim

Dynamic Graph Dimensionality is a methodology for computing the relative, local and global dimension of complex networks.

fcsim

Simulation on different pipelines to analyse functional connectivity from EEG data

findmycells

An end-to-end bioimage analysis pipeline with state-of-the-art tools for non-coding experts

gdr

Graph Diffusion Reclassification - Code from the paper "Semi-supervised classification on graphs using explicit diffusion dynamics" by RL Peach, A Arnaudon and M Barahona, Foundations of Data Science 2 (1), 19-33 (2020)

hackathon_2022

hackathon_2023

Repository for the ReTune Hackathon 2023

hcga

Highly Comparative Graph Analysis - Code for network phenotyping

inf

Code for infrastructure and data standardization

invasiveelectrophysiologyworkshop_i

This is the official ReTune repository for invasive neurophysiology workshop I, provided by projects B03, C01 and INF.

ipid1_inferring_phase_isostable_dynamics_order1

leaddbs

Lead-DBS is a scientific toolbox facilitating deep brain stimulation electrode locations and connectomic imaging.

let_it_be_3d

2D to 3D tracking data conversion pipeline

marble

Package for the data-driven representation of non-linear dynamics over manifolds based on a statistical distribution of local phase portrait features. Includes specific example on dynamical systems, synthetic- and real neural datasets. https://agosztolai.github.io/MARBLE/

mne_bug_fixes

MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

multiscalecentrality

Graph centrality is a question of scale - Multiscale centrality (MSC) is a scale dependent measure of centrality on complex networks.

ndx_ecg

This extension is developed to extend NWB data standards to incorporate ECG recordings.

neurokin

correlation between neural and kinematics, refactored and expansion of visualization and analysis methods. kinematic analysis based on a modified version of GGait.

pac

perceive

This repository contains MATLAB code to extract data from the Medtronic Percept bidirectional brain computer interface device for adaptive deep brain stimulation.

pybispectra

A Python signal analysis toolbox for computing spectral-domain interactions using the bispectrum.

pygenstability

PyGenStability: Multiscale community detection with generalized Markov Stability

pyparrm

Python port of the PARRM algorithm for removing periodic artefacts from signals.

pyperceive

Goal: Importing and using Perceive'd Percept data in Python