A Data Science core based on Docker containers
Here you can find a set of containers to help creating a data science core architecture, for example:
- LDAP server
- PostgreSQL server
- NFS server (Not active)
- Samba server (for integration with sequencer technology like Illumina)
- Galaxy server
- Zabbix server
- Software server (i.e. a lot of pre-installed software)
- Interative Compute server (a place for users to login)
- Exploratory Analysis server (JupyterHub with JupyterLab)
- SLURM grid configuration
There is a focus on bioinformatics, but the infrastructure can be used for other applications.
Installation
Please check the project documentation.
Acknowledgements
The sequencer Samba file configuration was originally inspired on David Personette's Samba container. It is currently completely different.
The current Galaxy configuration is based on Björn Grüning's Galaxy container.
Author and License
Copyright by Tiago Antao. Licensed under GNU Affero General Public License version 3.