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do_x3dna

To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.

g_coordndata

This program can be used to extract coordinates from the GROMACS MD Trajectory and to create GROMACS MD Trajectory from coordinate data.

g_distmat

It calculates average minimum-distance matrix and other related matrices between two atom-groups from molecular dynamics trajectory (GROMACS, NAMD or AMBER).

g_mmpbsa

g_resid_distrib

To calculate the residues position along X, Y and Z axes using GROMACS MD trajectory

g_rottransdna

To calculate rotational/translational displacement of the DNA from GROMACS MD trajectory

gcmapexplorer

Genome Contact Map Explorer - gcMapExplorer. Visit:

gmx_clusterbyfeatures

Features Based Conformational Clustering of MD trajectories. See details at:

gmx_hole

To calculate channel radius using hole2 program for GROMACS MD trajectory

mutual_information

This program calculates mutual information and generalized correlation

ngl

WebGL protein viewer

pyobabel

For more details visit homepage:

python_example

Example pybind11 module built with a Python-based build system