rjdkmr / gcmapexplorer Goto Github PK

May I ask what is the rho_km2 parameter in KR normalization and when it has been initialized for the first time?

See title.

This data is still useful for testing, so it would be good if it was available.

Pip throws errors when trying to install gcMapExplorer on Python 3.9. The main error is

  gcMapExplorer/lib/ccmapHelpers.c: In function ‘__Pyx_modinit_type_init_code’:
  gcMapExplorer/lib/ccmapHelpers.c:6752:85: error: ‘PyTypeObject’ {aka ‘struct _typeobject’} has no member named ‘tp_print’
   6752 |   __pyx_type_13gcMapExplorer_3lib_12ccmapHelpers___pyx_scope_struct__make_smooth_map.tp_print = 0;
        |                                                                                     ^

The program builds and installs fine locally. I am guessing there is some cached pre-compiled version that is being used, but --no-cache-dir does not work.

Hi,

you write in your documentation about data which is available in the folder data e.g. data/HomerFormat/human_INL_sample1_matrix_1Mb_raw.txt. Unfortunately, there is no such folder in your repository and I did not found a link to it. Can you a) point me to the location where this is available or b) upload these files?

Thanks a lot,

Joachim