Comments (2)
Seems caused of the conflicts among python 3.7, tensorflow, numpy, and so on. Same as #135
from rosettafold.
Hello, I did the following instruction.
[#135]
However, then i got new error like this:
/bin/sh: 1: /bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found/mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found/bin/sh: 1:
/mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
/bin/sh: 1: /mnt/D/RoseTTAFold-1.1.0/lddt/lddt: not found
multiprocessing.pool.RemoteTraceback:
"""
Traceback (most recent call last):
File "/home/ypkim/miniconda3/envs/folding/lib/python3.7/multiprocessing/pool.py", line 121, in worker
result = (True, func(*args, **kwds))
File "/home/ypkim/miniconda3/envs/folding/lib/python3.7/multiprocessing/pool.py", line 44, in mapstar
return list(map(*args))
File "/mnt/D/RoseTTAFold-1.1.0/DAN-msa/pick_final_models.div.py", line 72, in calc_lddt_dist
lddt_1 = float(os.popen("%s/lddt/lddt -c %s %s | grep Glob"%(script_dir, pose_i, pose_j)).readlines()[-1].split()[-1])
IndexError: list index out of range
"""
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/mnt/D/RoseTTAFold-1.1.0/DAN-msa/pick_final_models.div.py", line 114, in <module>
raw_dist = pool.map(calc_lddt_dist, args)
File "/home/ypkim/miniconda3/envs/folding/lib/python3.7/multiprocessing/pool.py", line 268, in map
return self._map_async(func, iterable, mapstar, chunksize).get()
File "/home/ypkim/miniconda3/envs/folding/lib/python3.7/multiprocessing/pool.py", line 657, in get
raise self._value
IndexError: list index out of range
Is there anyone can solve this problem?
Thank you.
from rosettafold.
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