Comments (6)
@Russel88 my packages are in version:
MicEco 0.9.19 and eulerr 7.0.0.
Unfortunately, I ran the example as you demonstrated here and it gave the same error:
Error in drawVennDiagram(data = x, small = small, showSetLogicLabel = showSetLogicLabel, :
gplots.drawVennDiagram: This internal function is used wrongly. Please call the 'venn' function with the same arguments instead.
I believe that many people are going through and will have the same problem as me.
Could you provide us with a package update or other solution?. I found your package very interesting.
Thanks @Russel88,
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Hi
I have not seen that error before, and have no idea how it can arise. I would need a example dataset to test if I can reproduce the error.
Best,
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Closing due to no answer
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Hi @Russel88, thanks for sharing the package,
I got the same error with this ps_venn function,
Exactly the same error output:
Error in drawVennDiagram(data = x, small = small, showSetLogicLabel = showSetLogicLabel, :
gplots.drawVennDiagram: This internal function is used wrongly. Please call the 'venn' function with the same arguments instead.
I test with other banks, such as:
data(GlobalPatterns)
date(esophagus)
data(enterotype)
date(soilrep)
Provided at: https://joey711.github.io/phyloseq/Example-Data.html and always the same error appears,
It would be interesting if you provided practical examples,
Thanks,
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Hmm, could it be a version problem. The following ran fine with MicEco 0.9.18 and eulerr 6.1.1:
library(phyloseq)
library(MicEco)
data(GlobalPatterns)
# Reduce the number of groups
ss <- sample_data(GlobalPatterns)
ss$SampleType <- ifelse(ss$SampleType %in% c("Soil", "Ocean"), as.character(ss$SampleType), "Others")
sample_data(GlobalPatterns) <- sample_data(ss)
# Plot
ps_venn(GlobalPatterns, group = "SampleType")
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I find this package for building venn diagrams : https://github.com/dusadrian/venn, interesting, because it allows you to create larger venn graphs, with a greater number of groups,
Maybe in a future adaptation, it'll be cool.
Thanks @Russel88,
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Related Issues (20)
- Font size in ps_venn HOT 4
- Change order of grouping categories in Venn diagram HOT 2
- Plot ASV counts and relative abundance HOT 5
- ps_venn and ps_euler give different results HOT 5
- ps_venn some advice (percent and label)? HOT 1
- Installation failed HOT 2
- fraction setting and OTUs in venn plot HOT 4
- Supported groups HOT 2
- Can we display percentages for each group rather than across all groups ps_euler HOT 1
- Number of reads to sample when using rarefy_rrna HOT 2
- Using community_rrna with Silva reference database for taxonomy HOT 4
- label and percent/count font size and space in between? HOT 1
- Showing less decimal places in the relative abundance venn diagram
- Inconsistent results HOT 2
- Error in do.call(c, singles[-x]) : second argument must be a list HOT 2
- In ps_venn percentage does not add up to 100% HOT 4
- Area-proportional Venn diagram? HOT 3
- The result of neutral.fit differs from other packages HOT 4
- Suprising gRsqr calculation in neutral.fit HOT 1
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