ryuzheng / clinvar_db_for_annovar

automatic update Clinvar db for ANNOVAR

Clinvar db for ANNOVAR

使用Github Actions自动更新ANNOVAR所使用的Clinvar数据库。Action的运行频率为每天一次。

本repo使用mobidic/update_annovar_db的脚本，对Clinvar的VCF文件进行处理。

下载地址: https://github.com/ryuzheng/clinvar_db_for_annovar/releases/latest

**地区请使用FastGit或jsDelivr进行加速下载。

示例如下：

# Release
# 假设下载链接为
# https://github.com/ryuzheng/clinvar_db_for_annovar/releases/download/tag-2021-05-21/hg19_clinvar_20210517.txt.gz
wget https://download.fastgit.org/ryuzheng/clinvar_db_for_annovar/releases/download/tag-2021-05-21/hg19_clinvar_20210517.txt.gz

# 假设文件位置为Clinvar_build/hg38/hg38_clinvar_20210517.txt.gz
wget https://cdn.jsdelivr.net/gh/ryuzheng/clinvar_db_for_annovar/Clinvar_build/hg38/hg38_clinvar_20210517.txt.gz

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Use Github Actions to automatically update the Clinvar database used by ANNOVAR. The Action runs everyday.

This repo handles Clinvar VCF files using the mobidic/update_annovar_db script.

Download sites: https://github.com/ryuzheng/clinvar_db_for_annovar/releases/latest