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bayesianinference_practicals

bs_inbv

A tool to help generate the file in.BV when using "complex" substitution models for MCMCTree. Particularly, the hessian is approximated by a bootstrap approach.

dosreislab.github.io

dos Reis Lab website

fasta-phylip-partitions

Convert from fasta to phylip format and generate partitioned data if needed

ii_sruk_scientific_computing

Material for the II edition of the SRUK Scientific Computing

luca-divtimes

mammals_dating

Methods for the analyses described in Álvarez-Carretero, et al. 2022 (https://doi.org/10.1038/s41586-021-04341-1)

mcmc-date

Estimate node ages of a phylogeny by approximating the phylogenetic likelihood with a multivariate normal distribution.

morpho

Methods for the analyses described in Álvarez-Carretero, et al. 2019 (https://doi.org/10.1093/sysbio/syz015)

morphometrics_practical

This is a repository containing the data set and the R script used to perform a Procrustes analysis (PA)

rnbash

R & Bash -- SRUK Research Computing workshop

sabifo4.github.io

Personal website - computational molecular evolution & biopipelines

scientific_computing

Materials, examples and exercises for the SRUK Scientific Computing course

tutorial_mcmctree

MCMCtree tutorials

vspipe

VSpipe - A pipeline to carry out virtual screenings