saint-even / bwgs

2021 BreedWheat Genomic Selection pipeline

BWGS (BreedWheat Genomic Selection pipeline)

The R package BWGS is developed by Dr. Louis Gautier Tran [V.G.] [email protected] and Dr. Gilles Charmet [email protected]. This repository is forked from original repository and modified as a R package. The BWGS is part of The European BreedWheat project (2011-2019) funded with 34M€. The publishing to Cran is maintained by Dr. Louis Gautier Tran.

Installation

Install from CRAN

install.packages("BWGS")

Install dev version from github Github

devtools::install_github('eurominister/BWGS')

Documentation

See full documentation from original repository and publication

Reference

G. Charmet, L.G. Tran, J. Auzanneau and R. Rincent, S. Bouchet (2020) BWGS: A R package for genomic selection and its application to a wheat breeding programme. PLOS ONE 15(4): e0222733. https://doi.org/10.1371/journal.pone.0222733

V.G. Tran, D. Ly, G. Charmet. A Breed Wheat Genomic Selection pipeline. EUCARPIA Cereal Section & ITMI, 2014, Wernigerode, Germany. 359 p., 2014, Cereals for Food, Feed and Fuel – Challenge for Global Improvement. ⟨hal-02739684⟩

G. Charmet, V.G. Tran, D. Ly and J. Auzanneau. Breeding value estimation for yield and quality traits in wheat using BWGS pipeline. 9. Intern. Wheat conference, Sep 2015, Sydney, Australia. ⟨hal-02340476)

G. Charmet, V.G. Tran, D. Ly, J. Auzanneau. A R-based integrated pipeline for genomic and application to a wheat breeding programme. 20. Eucarpia General Congress, The European Plant Science Organisation (EPSO). BEL., Aug 2016, Zurich, Switzerland. ⟨hal-02743844⟩

J. Charmet, V.G. Tran, J. Auzanneau. Breeding value estimation for Yield and Quality traits using BWGS pipeline. JOBIM : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. ⟨hal-02299627⟩

S. Babi, R. Rincent, V.G. Tran, D. Alvarez, J. Bordes, et al.. Peut-on prédire la composition de la farine du blé?. 5. Colloque du Réseau Français de Biologie des Graines, Oct 2015, Clermont-Ferrand, France. ⟨hal-02299641⟩