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Sam Nicholls's Projects

bcftools icon bcftools

A fork of the official development repository for BCFtools. To compile, the bcftools+calling branch of htslib is needed: git clone --branch=bcftools+calling git://github.com/samtools/htslib.git htslib

bioparser icon bioparser

Library for parsing several formats in bioinformatics

boatd icon boatd

Experimental robotic sailing boat daemon

bondage icon bondage

a command line tool for forcing files to stick together

bridgebuilder icon bridgebuilder

BridgeBuilder efficiently remaps BAM/SAM reads to a new reference by first building a "bridge" reference, first mapping to that bridge, and then remapping only a subset of reads to the full new reference.

chitin icon chitin

chitin: an awful shell for awful bioinformaticians

chitin-server icon chitin-server

A django project to deploy so chitin has a cloud to shout in

cinequeue icon cinequeue

The one true mplayer queueing node js application

conda icon conda

OS-agnostic, system-level binary package manager and ecosystem

csm01-notes icon csm01-notes

Potentially useful addendums for Programming for Scientists

dbot-stats icon dbot-stats

Statistics module for award winning depressionbot

dendropy icon dendropy

A Python library for phylogenetic scripting, simulation, data processing and manipulation.

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