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Current Role

Software Architect & AI Researcher at Indiana University's Division of Computational Pathology, and Technical Lead at the Medical Working Group of MLCommons working on designing solutions for privacy-focussed AI in Healthcare.

I believe open software fosters better science, and thus have been involved in multiple open-source projects and their associated research studies, including the Federated Tumor Segmentation (FeTS) platform and the Cancer Imaging Phenomics Toolkit (CaPTk). I am currently focusing my efforts on the following:

Interests

  • Applying concepts of AI (with a focus on privacy) to solve problems in healthcare.
  • Committed to doing reproducible and deployable research.
    • Firm believer of the saying a weak algorithm that is well written & integrated is better than a strong algorithm that isn't.
  • Advocating for F.A.I.R. in research.
  • Helping people choose the correct career path.

How to reach me

patis [at] iu.edu

Sarthak Pati's Projects

staged-recipes icon staged-recipes

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

synthseg icon synthseg

Contrast-agnostic segmentation of MRI scans

tiatoolbox icon tiatoolbox

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

tifffile icon tifffile

Read and write TIFF files. Forked from https://pypi.org/project/tifffile

tiffslide icon tiffslide

tifffile based openslide-python replacement

torchio icon torchio

Medical image preprocessing and augmentation tools for deep learning.

training icon training

Reference implementations of training benchmarks

tutorials icon tutorials

Here, we will be showcasing our seminar series “CPP for Image Processing and Machine Learning” including presentations and code examples. There are image processing and machine learning libraries out there which use C++ as a base and have become industry standards (ITK for medical imaging, OpenCV for computer vision and machine learning, Eigen for linear algebra, Shogun for machine learning). The documentation provided with these packages, though extensive, assume a certain level of experience with C++. Our tutorials are intended for those people who have basic understanding of medical image processing and machine learning but who are just starting to get their toes wet with C++ (and possibly have prior experience with Python or MATLAB). Here we will be focusing on how someone with a good theoretical background in image processing and machine learning can quickly prototype algorithms using CPP and extend them to create meaningful software packages.

vision icon vision

Datasets, Transforms and Models specific to Computer Vision

wsidicom icon wsidicom

Python package for reading DICOM WSI file sets.

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