scottsnapperlab / pytest-ngsfixtures

pytest fixtures for next generation sequencing applications

pytest-ngsfixtures

About

This is a pytest plugin that enables next generation sequencing pytest fixtures, including fastq files and output files from a variety of bioinformatics applications and tools. There are sequencing fixtures for some common sample layouts, but it's easy to generate additional sample fixture layouts using fixture factories.

See the pytest-ngsfixtures documentation for more information.

• Free software: GNU General Public License v3

Features

• ngs data sets of different sizes
• predefined sample layouts
• factories for generating new sample layouts
• result files from a variety of bioinformatics applications and tools

Installation

$ conda install pytest-ngsfixtures

Credits

This package was created with Cookiecutter and the audreyr/cookiecutter-pypackage project template.