Cmake is required for the installation. Also, git is suggested for cloning the repository.
sudo apt-get install cmake git
git clone https://github.com/smortezah/Phoenix.git
cd Phoenix/
cmake .
make
./phoenix [OPTION]... -m [MODEL(S)] -r [REFERENCE(S)] -t [TARGET(S)]
To see the options, type:
./phoenix -h
Please cite the following papers, if you use Phoenix:
- M. Hosseini, D. Pratas and A.J. Pinho, "On the role of inverted repeats in DNA sequence similarity," 11'th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB), Springer, June 2017.
Please let me know if there is any issues.