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0.0 2.0 0.0 4.93 MB

License: BSD 3-Clause "New" or "Revised" License

CMake 1.32% Starlark 0.16% Shell 0.23% C++ 94.30% C 0.23% Python 2.68% Makefile 0.35% HTML 0.02% Batchfile 0.02% R 0.27% TeX 0.39% GDB 0.01%

seqan3_demo's Introduction

Demo to show possible improvements to sdsl and seqan3

Instructions:

  1. clone this repository
  2. run mkdir seqan3_demo/build; cd seqan3_demo/build
  3. run cmake cmake ..
  4. enjoy ./cursor_demo

This repo does not use submodules. Everything is included via subrepos.

Check commit '84801d139' to see the additions to sdsl.

Check file 'seqan3/search/fm_index/bi_fm_index_cursor_ng2.hpp' for cursor implementation. Check file 'src/main.cpp' for usage of cursor.

Also file 'seqan3/search/search_algorithm/search_ng2.hpp' has a sketch of how a search could look like. This search will not work with "normal" search schemes, but need so called expanded ones. (Code to do this is currently missing)

seqan3_demo's People

Contributors

sgssgene avatar joergi-w avatar mitradarja avatar

Watchers

avatar James Cloos avatar

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