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Ron Shamir's Lab's Projects

recycler icon recycler

This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir

scapp icon scapp

SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-021-01068-z

sorting-cancer-karyotypes icon sorting-cancer-karyotypes

An ILP algorithm for sorting cancer karyotypes. "Sorting cancer karyotypes using double-cut-and-joins, duplications and deletions", R. Zeira and R. Shamir, Bioinformatics, bty381, 2018. https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/bty381/4992148

sprint icon sprint

This R code reproduces the results presented in: "Personalized prediction of adverse heart and kidney events using pre-enrollment and time course data from SPRINT and ACCORD trials"

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