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Wei Shen 沈 伟

Bioinformatician
Institute for Viral Hepatitis, The Second Affiliated Hospital of Chongqing Medical University, China

Github | Twitter | Biostars | Google Scholar | ORCID

  • 🔬 I’m currently working on microbial genomics and metagenomics.
  • 🔭 I'm passionate about reproducible research and open-source software.

Learn more: http://shenwei.me

I'm grateful to users who have greatly helped to report bugs and suggest new features.
I may respond to issues or fix bugs quickly, but I usually implement new features periodically (two or more weeks).

Wei Shen's Projects

awesome icon awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

bbuffer icon bbuffer

An alternative of standard library bytes.Buffer

bio icon bio

A lightweight and high-performance bioinformatics package in Golang

biofast icon biofast

Benchmarking programming languages/implementations for common tasks in Bioinformatics

blast-nf icon blast-nf

A nextflow-based BLAST command-line helper tool

bloomfilter icon bloomfilter

Face-meltingly fast, thread-safe, marshalable, unionable, probability- and optimal-size-calculating Bloom filter in go

breader icon breader

breader (Buffered File Reader), asynchronous parsing and pre-processing while reading file. Safe cancellation is also supported.

brename icon brename

A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression

breseq-rm-bg icon breseq-rm-bg

Removing control/background mutations from breseq output index.html

bwt icon bwt

Burrows-Wheeler Transform and FM-index in golang

clipboardtextjoiner icon clipboardtextjoiner

Monitoring system clipboard change and joining multi-line text. It's very useful when copying multi-line text from PDF files.

cluster_files icon cluster_files

cluster files into multiple directories by creating symbolic links or moving files

cnote icon cnote

A platform independent command line note app

crun icon crun

Run workflow mixed with concurrent and sequential jobs. Please use https://github.com/shenwei356/rush

csvtk icon csvtk

A cross-platform, efficient and practical CSV/TSV toolkit in Golang

datakit icon datakit

CSV/TSV file manipulation and more. Please use my another tool: csvtk, https://github.com/shenwei356/csvtk

dirsize icon dirsize

Summarize sizes of directories and files in directories

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