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Wei Shen 沈 伟

Bioinformatician
Institute for Viral Hepatitis, The Second Affiliated Hospital of Chongqing Medical University, China

Github | Twitter | Biostars | Google Scholar | ORCID

  • 🔬 I’m currently working on microbial genomics and metagenomics.
  • 🔭 I'm passionate about reproducible research and open-source software.

Learn more: http://shenwei.me

I'm grateful to users who have greatly helped to report bugs and suggest new features.
I may respond to issues or fix bugs quickly, but I usually implement new features periodically (two or more weeks).

Wei Shen's Projects

swr icon swr

Wei Shen' R utilities

taxid-changelog icon taxid-changelog

NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.

taxonkit icon taxonkit

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV

todo icon todo

A very simple online todo list application

unik icon unik

A k-mer serialization package for Golang

unikmer icon unikmer

a versatile toolkit for k-mers with taxonomic information

util icon util

Golang utility packages

xopen icon xopen

open files for buffered reading and writing in #golang

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