Related Issues (20)
- sQTL representations in biosurfer
- Associate novelty information for PacBio transcripts read into Biosurfer
- Gene-row track for expression visualization
- Display "absolute" frame of translation instead of relative HOT 1
- EXITC detection raises error when aligning some transcripts
- Implement generic ProteinFeature class
- ORF start/stop location in transript bug HOT 3
- ProteinAlignmentBlock should account for AA sequence matches HOT 1
- Refactor Exon to map against an association table between the transcript and exon tables HOT 2
- Resolving overlaps between domain mappings HOT 2
- Refactoring/optimization of IsoformPlot HOT 1
- Reference database initialization
- How to better organize different data sources
- Abstract data structure to handle relationships among parent and children
- Behavior of linking Nucleotides to Residues is possibly counterintuitive
- Annotation primitives as objects themselves HOT 2
- Wiki for Biosurfer Project HOT 1
- Clean up imports and standardize how code accesses resources within project directory
- Frameshifts are reversed for minus strand genes
- initial database creation
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from biosurfer.