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magma_celltyping

Identify cell types underlying the associations found in GWAS summary statistics

mesc

Mediated Expression Score Regression (MESC)

mixer

Causal Mixture Model for GWAS summary statistics

nptest

:exclamation: This is a read-only mirror of the CRAN R package repository. nptest — Nonparametric Bootstrap and Permutation Tests

numcl

Numpy clone in Common Lisp

numpy-ml

Machine learning, in numpy

paperdiscussion

this is a repository to store various genetic models

pastas

:spaghetti: Pastas is an open-source Python framework for the analysis of groundwater time series.

pheweb

A tool to build multi-phenotype GWAS browsers

plotnine

A grammar of graphics for Python

probabilistic-models

Collection of probabilistic models and inference algorithms

qsubshcom

qsub command for serveral cluster engine

regenie

regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.

regionscan

RegionScan : A comprehensive R package for region-level genome-wide association testing with integration and visualization of multiple-variant and single-variant hypothesis testing

revealjs_template

reveal.js presentation written in markdown

sachac.github.io

Quick shared webpages

shadowsocks-rss

ShadowsocksR update rss, SSR organization

shouyeliu.github.io

silverrainz.github.io

My note-taking system powered by Sphinx

site.org

Website in org mode

smr

smrdb

svm-r-markdown-templates

I have a suite of R Markdown templates for academic manuscripts, beamer presentations, and syllabi. I share them here.

test

twas_sim

Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.

upsetjs

😠 UpSet.js - a set visualization library for rendering UpSet Plots (a JavaScript re-implementation of UpSet(R) by Lex et al), Euler Diagrams, Venn Diagrams, and Karnaugh Maps

viu

Terminal image viewer with native support for iTerm and Kitty

wiki

AzerothCore wiki based on Drassil Git-Wiki