Shouye Liu's Projects
Identify cell types underlying the associations found in GWAS summary statistics
Mediated Expression Score Regression (MESC)
Causal Mixture Model for GWAS summary statistics
:exclamation: This is a read-only mirror of the CRAN R package repository. nptest — Nonparametric Bootstrap and Permutation Tests
Numpy clone in Common Lisp
Machine learning, in numpy
this is a repository to store various genetic models
:spaghetti: Pastas is an open-source Python framework for the analysis of groundwater time series.
A tool to build multi-phenotype GWAS browsers
A grammar of graphics for Python
Collection of probabilistic models and inference algorithms
qsub command for serveral cluster engine
regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.
RegionScan : A comprehensive R package for region-level genome-wide association testing with integration and visualization of multiple-variant and single-variant hypothesis testing
reveal.js presentation written in markdown
Quick shared webpages
ShadowsocksR update rss, SSR organization
My note-taking system powered by Sphinx
Website in org mode
I have a suite of R Markdown templates for academic manuscripts, beamer presentations, and syllabi. I share them here.
Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.
😠 UpSet.js - a set visualization library for rendering UpSet Plots (a JavaScript re-implementation of UpSet(R) by Lex et al), Euler Diagrams, Venn Diagrams, and Karnaugh Maps
Terminal image viewer with native support for iTerm and Kitty
AzerothCore wiki based on Drassil Git-Wiki