shunsunsun / discovery-app

The Data Discovery Engine project by the CD2H Data working-group

Discovery

A Web Schema Visualization App

Run a local dev server

1. Install Elasticsearch at localhost:9200 (follow this instruction)
2. Clone this repo

   git clone https://github.com/biothings/discovery-app.git
   

3. Install system packages (on Ubuntu, for example)

   sudo apt install libcurl4-openssl-dev libssl-dev
   

4. Change directory to project folder

   cd discovery-app
   

5. Install python dependencies

   pip install -r requirements.txt
   

6. Create a config_key.py under project folder with

   COOKIE_SECRET = '<Any Random String>'
   GITHUB_CLIENT_ID = '<your Github application Client ID>'
   GITHUB_CLIENT_SECRET = '<your Github application Client Secret>'
   

   Follow this instruction to create your Github Client ID and Secret.
7. Run dev server

   python index.py --debug
   

You should now be able to access the homepage at http://localhost:8000/

Run in Docker

First refer to step 5 above to setup the credentials required to run the program.
The following commands should be issued under the first level project folder.
Make sure you have port 8000 and 9200 not in use when starting containers.

Build

docker-compose up --detach

Stop and restart

docker-compose stop
docker-compose start

Update codebase

docker-compose exec web git pull

Remove containers

docker-compose down