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anvio

An analysis and visualization platform for 'omics data

anvio.org

The anvi'o community web page

bioconda-recipes

Conda recipes for the bioconda channel.

clustergenomes

Archive for ClusterGenomes scripts

ictv_virophagesg

Data and information related to work by the ICTV Virophage Study Group

inovirus

Set of scripts and data used to detect putative inovirus sequences and/or taxonomically classify them.

kb_iphop

metabolomics_cyanophagegrazer

Scripts used in the analysis of metabolomics data from the Cyanophage - Cyanobacteria - Grazer experiment

prophagepredictioncomparisons

Comparisons of multiple different prophage predictions

rvmt

Code, scripts, some logs and general misc. from to the RNA viruses in MetaTranscriptome discovery project.

scripts_pcrlibs_assembly_optimization

Custom perl scripts used in "Optimizing de novo genome assembly from PCR-amplified metagenomes"

simroux.github.io

virsorter

Source code of the VirSorter tool, also available as an App on CyVerse/iVirus (https://de.iplantcollaborative.org/de/)

virsorter-curated-dataset-scripts-package

Set of scripts used in the initial study of VirSorter Curated Dataset

virsorter2

customizable pipeline to identify viral sequences from (meta)genomic data

virsorter2_to_anvio

Draft script to generate Anvi'o-compatible annotation files from VirSorter2 output, for visualization of VS2 results in Anvi'o