- for physio see https://github.com/WillForan/processPhysio_matlab/blob/master/physio_proc_wallace.m
- for preprocessing see local
- see ~/src/restPreproc/ to generate rest_preproc_mni.nii.gz (find /data/Luna1/Reward/Rest -name rest_preproc_mni.nii.gz )
- need mni template and 244 ROIs
the rest we make (see Data)
- install lein and drip
curl https://raw.github.com/technomancy/leiningen/stable/bin/lein > ~/bin/lein
curl -L http://drip.flatland.org > ~/bin/drip
# add export "PATH=$PATH:~/bin" to .bashrc/.profile/.zshrc/whatever if it's not there
- get drake
git clone [email protected]:Factual/drake.git
cd drake && lein uberjar
echo "export PATH=$PATH:$(pwd)/bin" >> ~/.bashrc
. ~/.bashrc
- run
drake
matlab octave(?): BrainNet.m http://www.nitrc.org/projects/bnv
this file is written for org-mode see emacs and http://orgmode.org/worg/index.html
FEF (174) | SEF (213) | 3.99 | Flat when phsyio regressors not included |
SEF (213) | IFG (241) | 2.832 | Flat when physio regressors not included |
https://github.com/WillForan/processPhysio_matlab
https://github.com/LabNeuroCogDevel/restPreproc
Process is based on Aarthi’s preprocessing (Skynet:Phillips/rest_preproc_redo_AP) which is replicated by scotts (rest_preproc_redo_SM) This is validated with subject 10845. Subject 10152 is different though. See ../rest_preproc_nophysio_withphysiotest
Drakefile | prodedure to make data |
IDSexDOBVisitAge.txt | subject information |
bb244MNI_LPI_2mm.nii.gz | get roi averages for each time point and each bb244 |
bb244_coordinate | LPI list of coords |
txt/* | txt outputs |
txt/subjectInpipelines.txt | breakdown of subjects, now used as who to include |
txt/____ | long format of each ROI ROI corr for 244 in each subject for all pipelines |
txt/bb244Stats_mni/* | nz means for each ROI (bb244, order as 256) |
txt/ROIROI_median/ | intermediate output of getCor.jl, median corr for each ROI |
using |t|>2.58 see bottom of 03_comp_perROIROI.R
- all signficant ROI-ROI: 246+, 110- (inv age)
- developmental ROI-ROI signficant interactions were limited to SEF correlation to FEF and IFG
- developmental ROI-ROI signficant interactions were limited to FEF to Putanment and dACC