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Sofia Stamouli's Projects

configs icon configs

Config files used to define parameters specific to compute environments at different Institutions

gms-artic icon gms-artic

A nextflow pipeline with a GMS touch for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics).

meatballs icon meatballs

An open source recipe book from the awesome staff of Clinical Genomics

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

repo1 icon repo1

Trigger repo1 on repos2 release

repo2 icon repo2

Repo2 is a test for new releases

repo3 icon repo3

This is a test to automatically pull docker containers twice per week.

taxprofiler icon taxprofiler

Highly parallelised multi-taxonomic profiling of shotgun metagenomic data

test-datasets icon test-datasets

Test data to be used for automated testing with the nf-core pipelines

tools icon tools

Python package with helper tools for the nf-core community.

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