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rmvcsdir

remove version control directories

rna

Rna is a ruby gem that provides simple DSL for generating node.json files required by chef-solo.

rna-1

measuring properties of RNA like conservation(actually DNA) and accessibility

rna-2

Interactive report to assess the quality of large RNA-seq cohorts

rna-3

rna-3d-hub

Resources for RNA Structural Bioinformatics: RNA 3D Motif Atlas, RNA Non-redundant Lists, RNA Structure Atlas

rna-3d-hub-core

New resources for RNA Structural Bioinformatics: RNA 3D Motif Atlas, RNA Non-redundant Lists, RNA Structure Atlas (motif extraction and classification, database management)

rna-4

Clustered SQL engine

rna-base-triples

Matlab code to model, find, and count RNA base triples

rna-bloom

:hibiscus: lightweight transcriptome assembly for short reads and nanopore reads

rna-cli

A CLI to rule them all.

rna-contamination-scripts

Scripts for the RNA contamination manuscript

rna-count-kallisto

Estimate fastq-formatted read abundace in RNA-Seq analysis with Kallisto

rna-count-salmon

Count your fastq-formatted rna-seq reads with Salmon

rna-dataset

rna-fretools.github.io

rna-long-reads-simulator

rna-pipeline

RNA sequencing pipeline for Stanford's Sherlock HPC cluster

rna-playground

Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.

rna-protein-stacking

A place to put code for displaying RNA protein interaction data

rna-puzzles-standardized-submissions

Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zip

rna-puzzles-toolkit-overview

RNA-Puzzles-toolkit-overview

rna-science-toolbox

A platform to do RNA science

rna-scoop

:shipit: interactive visualization of single-cell transcriptomes

rna-seq

A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample

rna-seq-1

RNA-seq analysis pipeline, featureCounts input, edgeR, functional enrichment, visualization

rna-seq-2

RNA-seq scripts

rna-seq-3

Nextflow RNA-seq pipeline for quality controls and gene expression

rna-seq-4

RNA-seq analysis pipeline based on Snakemake

rna-seq-5

workflow for bulk rna-seq