Comments (1)
Hi, it looks like it's a problem with the normalization step. I'd suggest reaching out to the authors who developed the preprocessIllumina()
in minfi
(https://bioconductor.org/packages/minfi). Thanks!
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Related Issues (9)
- s/compote/methylCC/g; HOT 3
- Recommendations for low coverage (5x) WGBS data? HOT 7
- Does methyICC works for non-whole-blood tissues? HOT 3
- Add an "unknown cell type" to estimated proportions
- BSseq object contained 130 out of 600 celltype-specific regions. HOT 1
- Error in `colnames<-`(`*tmp*`, value = cell_levels) : attempt to set 'colnames' on an object with less than two dimensions HOT 5
- inconsistent results
- methyICC for WGBS data of tissue samples HOT 2
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