stephenturner Goto Github PK

2048-exome

An variant calling-themed 2048 clone

adapters

Adapters for trimming

alignment-extraction

Alignment extraction

alpinist

Alpine Linux image with R, a subset of Tidyverse packages, and domain-specific tools for genomic data manipulation and analysis.

angsd

Program for analysing NGS data.

annotables

R data package for annotating/converting Gene IDs

bakeoff

bayeux

Historic Tale Construction Kit - opensource and customizable version !

bioconda-recipes

Conda recipes for the bioconda channel.

bioseq-js

https://stephenturner.github.io/bioseq-js

celltypist

A tool for semi-automatic cell type annotation

clean_tree2

Forensic Y-SNP analysis beyond SNaPshot: High-resolution Y-chromosomal haplogrouping from low quality and quantity DNA using Ion AmpliSeq and targeted massively parallel sequencing

clinvar

This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.

covcalc

Coverage / read count calculator for sequencing experiments

covid19-forecast-hub

Projections of COVID-19, in standardized format

csvfaker

Generate CSV files with fake data from the command line

dataorganization

Tutorial on organizing data in spreadsheets.

deseq-to-fgsea

devnotes

Random programming notes and orphan scripts

dna-nn

Model and predict short DNA sequence features with neural networks

docker-builds

:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics

docker101

drawdata

drawio

Source to app.diagrams.net

drawmydata

A webpage for teaching that lets you make a dataset by clicking in a blank scatterplot

dssp

Application to assign secondary structure to proteins

dstt-rmd

CSTE DSTT RMarkdown demo

duckpenguins

Demonstration of a Shiny app that queries a duckdb database holding the Palmer Penguins data. The app's code was generated with a simple prompt to ChatGPT.

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

execorder