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aws-batch-arch-for-protein-folding

aws-batch-architecture-for-alphafold

aws-batch-genomics

Software sets up and runs an genome sequencing analysis workflow using AWS Batch and AWS Step Functions.

aws-examples

Various examples of interacting with AWS through both the CLI and the SDK

aws-genomics-workflows

Genomics Workflows on AWS

batchit

simple jobs submission via command-line for AWS batch

benchm-ml

A minimal benchmark for scalability, speed and accuracy of commonly used open source implementations (R packages, Python scikit-learn, H2O, xgboost, Spark MLlib etc.) of the top machine learning algorithms for binary classification (random forests, gradient boosted trees, deep neural networks etc.).

biojupies

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

biopython

Fork of official git repository for Biopython

blkbox

Data exploration with multiple machine learning algorithms

bs831-genomics

Course Materials for Genomics Data Mining

cancergd

Source code for the CancerGD resource

ceres

Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens

chip-seq-analysis

ChIP-seq analysis notes from Ming Tang

covid-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

crispr-nf

Pre-processing of multiplexed CRISPR / shRNA Screens

datalab-examples

Example Cloud Datalab iPython Notebooks for genomics use cases.

deep-learning-genomics-primer

Contains files for the deep learning in genomics primer.

deeploc

This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content microscopy data with deep learning"

deeppep

Deep proteome inference from peptide profiles

demeter

Deconvolution of seed effects from gene effects in large scale RNAi screens

dropseqpipe

A SingleCell RNASeq pre-processing snakemake workflow

dspp-keras

Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.

examples

Example CellProfiler pipelines.

examples-python

Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.

fake_patient_data

genometools

GenomeTools genome analysis system.

google-interview-university

A complete daily plan for studying to become a Google software engineer.

imnet

imNet: a Sequence Network Construction Toolkit