stuart-bradley / bioinf_dicodon_graph

Rails application for displaying codon, and dicodon frequencies

DiCodon Graph

Uses the Google graph API to map both the dicodon frequencies, and individual codon frequences throughout a user inputted sequence or fasta file.

Graphs are displayed 60 codons at a time, and have mouseover callouts for each specific datapoint.

Dicodon Frequencies

The dicodon frequencies are specific to a single organism. Currently the site uses an example bacteria, but the while in /lib/data/LZ1561_CPI_DetectableOrfs_2.txt is easy enough to copy and alter. Once the file is altered, the database will need to be reseeded.

Codon Frequencies

Individual codon frequencies do not require additional files, and is an extention of my eariler work with NucleotideFinder.