Comparative analysis between ChIP-seq and other NGS datasets requires prior characterization of their degree of technical similarity. NGS Q/C Generator infer Quality indicators from the distribution of sequenced reads associated to a particular NGS profile. Such information is then used for comparative purposes and for defining strategies aiming to improve the quality of the sample-derived datasets.
Improved and maintained by Matthias Blum and Pierre-Etienne Cholley.
- sort from the GNU coreutils
- Python 2.7 and the following packages:
- numpy
- scipy (requires
lapack-devel
, andblas-devel
) - matplotlib
- Pillow (requires
libzip-devel
,libjpeg-devel
, andlibpng-devel
) - reportlab
- Bedtools
- Gnuplot 4.4+ (requires
libcairo2-dev
,libgd2-xpm-dev
, andlibpango1.0-dev
)
Build the C tools by running sh build.sh
in the utils directory.
Create a copy of config.ini.sample
, rename it config.ini
, and modify it (change the softwares
section)