An implementation of 3D U-Net CNN models for the task of voxel-wise semantic segmentation of 3D MR images for isolation of Low-Grade and High Grade Gliomas, the common types of brain tumour.
The datasets used in the code correspond to the following open-access public databases:
TCIA: https://wiki.cancerimagingarchive.net/display/Public/LGG-1p19qDeletion,
BraTs: https://www.med.upenn.edu/sbia/brats2018/data.html,
LGG: https://wiki.cancerimagingarchive.net/display/Public/TCGA-LGG,
HGG: https://wiki.cancerimagingarchive.net/display/Public/CPTAC-GBM.