Failure to install `mVIRs` about mvirs

[valentynbez]

Managed to resolve following the subsequent steps:

1. Loaded bzip2 using module load bzip2
2. Learned pip install pysam fails with python==3.8 - downgraded python==3.7
3. Got pysam installation error:

creating build/temp.linux-x86_64-cpython-37/pysam
      gcc -pthread -B /nfs/home/vbezshapkin/miniconda3/envs/mvirs/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/tmp/pip-install-o58dw52c/pysam_e5a03d4c9d1a4ad18f23c1fb1e922126/htslib -I/tmp/pip-install-o58dw52c/pysam_e5a03d4c9d1a4ad18f23c1fb1e922126/samtools -I/tmp/pip-install-o58dw52c/pysam_e5a03d4c9d1a4ad18f23c1fb1e922126/samtools/lz4 -I/tmp/pip-install-o58dw52c/pysam_e5a03d4c9d1a4ad18f23c1fb1e922126/bcftools -I/tmp/pip-install-o58dw52c/pysam_e5a03d4c9d1a4ad18f23c1fb1e922126/pysam -I/tmp/pip-install-o58dw52c/pysam_e5a03d4c9d1a4ad18f23c1fb1e922126 -I/nfs/home/vbezshapkin/miniconda3/envs/mvirs/include/python3.7m -c htslib/bcf_sr_sort.c -o build/temp.linux-x86_64-cpython-37/htslib/bcf_sr_sort.o -Wno-unused -Wno-strict-prototypes -Wno-sign-compare -Wno-error=declaration-after-statement
      as: unrecognized option '--gdwarf-5'

4. Installed pysam using conda
5. Run pip install mvirs

[valentynbez]

The final de novo solution is:

$ conda create -n mvirs python==3.7 pip bwa samtools pysam -c bioconda 
$ conda activate mvirs
$ python -m pip install mvirs