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raccoon's Introduction

raccoon

Remark: all functionality implemented in raccoon has been moved to progenomics and will be maintained there.

Rapid bActerial Cross-species COmparative geNOmics

  • Rapid: all tasks should be feasible to run overnight on a modern desktop computer on thousands of bacterial genomes.
  • Bacterial: archaeal genomes are also fine. "Prokaryotic" didn't fit into the acronym.
  • Cross-species: RACCOON can work with any set of genomes, not necessarily belonging to the same species (in contrast to a tool like e.g. roary).
  • Comparative Genomics: RACCOON contains several pipelines to compare large numbers of genomes.

RACCOON is currently in development. In the near future, a pipeline will be included that performs extraction of all single-copy core genes from a large set of genomes, and this in a database-independent manner.

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