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2023-cacs

Course T-304-CACS, year 2023

active-calculus-single-mbx

arpack-ng

Collection of Fortran77 subroutines designed to solve large scale eigenvalue problems.

biocode

Bioinformatics code libraries and scripts

booleval

Fast vectorized comparison and Boolean operations in the Wolfram Language.

bugbug

Platform for Machine Learning projects on Software Engineering

cctbx_project

Computational Crystallography Toolbox

cell_blast

A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.

celldart

domain adaptation of spatial and single-cell transcriptome

cellxgene

An interactive explorer for single-cell transcriptomics data

clusim

An extended package for clustering similarity

colorbar

A Mathematica package to design custom color functions

connectedgraphsampler

Importance sampling for connected graphs with given degrees

coolprop

Thermophysical properties for the masses

coxiter

CoxIter is a computer program designed to compute invariants of hyperbolic Coxeter groups.

cpa

The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell level. CPA performs OOD predictions of unseen combinations of drugs, learns interpretable embeddings, estimates dose-response curves, and provides uncertainty estimates.

dance

DANCE: A Deep Learning Library and Benchmark Platform for Single-Cell Analysis

dash-user-contributions

Dash repo of user contributed docsets

dnet

An open-source R package for omics data integrative analysis in terms of network, evolution and ontology

docker-python

Kaggle Python docker image

episcanpy

Episcanpy: Epigenomics Single Cell Analysis in Python

filtration_curves

Code for the KDD 2021 paper 'Filtration Curves for Graph Representation'

fireworks

The Fireworks Workflow Management Repo.

graphkernels

A package for computing Graph Kernels

gs-netstream

hal

HAL – The Hardware Analyzer

hypernetx

Python package for hypergraph analysis and visualization.

igraph

Library for the analysis of networks

igraph.org

igraph.org web site

igraphm

IGraph/M is the igraph interface for Mathematica